miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 39562 0.68 0.774108
Target:  5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3'
miRNA:   3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 239789 0.68 0.774109
Target:  5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3'
miRNA:   3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 123623 0.68 0.775023
Target:  5'- -cCGCCGuAGCAgCGGCGUGaugauGCGCAGc -3'
miRNA:   3'- cuGCGGC-UCGUgGUCGUACg----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 175635 0.68 0.775023
Target:  5'- cAUGCCGGGCA-CGGCGagagcguaucguUGCGCACu- -3'
miRNA:   3'- cUGCGGCUCGUgGUCGU------------ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 102792 0.68 0.775023
Target:  5'- cACGCCccguGCGCCGGCA-GCGaCGCAc -3'
miRNA:   3'- cUGCGGcu--CGUGGUCGUaCGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 117883 0.68 0.775023
Target:  5'- cGAgGCCGAGCA-CGGCcggGCGCGgAAa -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGua-CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 222251 0.68 0.784096
Target:  5'- --aGUCGAGCGcgcucuCCAGC-UGCGCGCGc -3'
miRNA:   3'- cugCGGCUCGU------GGUCGuACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 14924 0.68 0.784096
Target:  5'- cGGCGCuuCGAGCGCgAGCGgcaGCGC-CAGa -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGUa--CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 119980 0.68 0.784096
Target:  5'- --gGCCGAGU-CCAGCAUG-GCACc- -3'
miRNA:   3'- cugCGGCUCGuGGUCGUACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 163832 0.68 0.784096
Target:  5'- uGAUGCCGuGCcugcccaucgccGCCAGCAUcacGCGCAUc- -3'
miRNA:   3'- -CUGCGGCuCG------------UGGUCGUA---CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 138012 0.68 0.784096
Target:  5'- cGGCGUCGAgguGCGCguGCGUcgcugccgGCGCACGGg -3'
miRNA:   3'- -CUGCGGCU---CGUGguCGUA--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 112993 0.67 0.79215
Target:  5'- uGGCGCCGGGgcccuucCACgAGC-UGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUC-------GUGgUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 62222 0.67 0.793038
Target:  5'- gGACGCCGuGCugCAGgAggGCGCcCGg -3'
miRNA:   3'- -CUGCGGCuCGugGUCgUa-CGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 136057 0.67 0.793038
Target:  5'- cGAC-CUGGGCAgCGGC-UGCGCGCu- -3'
miRNA:   3'- -CUGcGGCUCGUgGUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 115368 0.67 0.793038
Target:  5'- cGCGUCGcuGGCcaggGCCGGCAUGUGCAgGg -3'
miRNA:   3'- cUGCGGC--UCG----UGGUCGUACGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 239917 0.67 0.793038
Target:  5'- aACGCCGuGCGCCAGaugGUGCcCAu -3'
miRNA:   3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 39690 0.67 0.793038
Target:  5'- aACGCCGuGCGCCAGaugGUGCcCAu -3'
miRNA:   3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.