miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 70909 0.67 0.801841
Target:  5'- aGCGCCGucagagccgucAGCGCCAGCAggGUcCACAGc -3'
miRNA:   3'- cUGCGGC-----------UCGUGGUCGUa-CGcGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 15752 0.67 0.801841
Target:  5'- uGCGcCCGGGCAgCAGCAUGCccgagcuaCGCGAc -3'
miRNA:   3'- cUGC-GGCUCGUgGUCGUACGc-------GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 185106 0.67 0.801841
Target:  5'- aGGCGCUGcGCGCCGaCAUGCuggaGCACGGg -3'
miRNA:   3'- -CUGCGGCuCGUGGUcGUACG----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 224863 0.67 0.807917
Target:  5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3'
miRNA:   3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 49817 0.67 0.810498
Target:  5'- --gGCUGGGCGCCGuGCAgUGCGCcguGCAGa -3'
miRNA:   3'- cugCGGCUCGUGGU-CGU-ACGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 53947 0.67 0.810498
Target:  5'- aGACGCUGAGCuggGCCgacgAGcCGUGCuGCACGc -3'
miRNA:   3'- -CUGCGGCUCG---UGG----UC-GUACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 31086 0.67 0.810498
Target:  5'- cGGCuGCCGuGGCugCcGC-UGCGCACGAc -3'
miRNA:   3'- -CUG-CGGC-UCGugGuCGuACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 17041 0.67 0.810498
Target:  5'- cGACGacaaCGgcAGCACCAGCA-GCGC-CGAc -3'
miRNA:   3'- -CUGCg---GC--UCGUGGUCGUaCGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 197704 0.67 0.811355
Target:  5'- aGCGCCGAGCGCucgccgCAGCGcuuggucagcucgucGCGCGCGu -3'
miRNA:   3'- cUGCGGCUCGUG------GUCGUa--------------CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 145305 0.67 0.818999
Target:  5'- -uCGCCGGGCAuCCAGUucgGCcugaaGCACGAg -3'
miRNA:   3'- cuGCGGCUCGU-GGUCGua-CG-----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 116559 0.67 0.818999
Target:  5'- cGCGcCCGcAGaCACCaAGCAUGcCGCGCGg -3'
miRNA:   3'- cUGC-GGC-UC-GUGG-UCGUAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 161643 0.67 0.818999
Target:  5'- cGGCGCCaccGAGCACggcuaCAGCAucUGCGuCACGu -3'
miRNA:   3'- -CUGCGG---CUCGUG-----GUCGU--ACGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 110838 0.67 0.818999
Target:  5'- -cCGCCGGcGCAgCGGCAgcgacgGUGCACGu -3'
miRNA:   3'- cuGCGGCU-CGUgGUCGUa-----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 123937 0.67 0.818999
Target:  5'- -cCGCCGGcGCGCCGccGCAgccgcgccacUGCGCGCGc -3'
miRNA:   3'- cuGCGGCU-CGUGGU--CGU----------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 89839 0.67 0.818999
Target:  5'- aGACGCCGuAGCcgaugucggccGCCAGCGccgcGuCGCGCGAc -3'
miRNA:   3'- -CUGCGGC-UCG-----------UGGUCGUa---C-GCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.