miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 102020 0.73 0.492082
Target:  5'- cGugGuuGAGCACCugGGCcacgGCGCGCAGc -3'
miRNA:   3'- -CugCggCUCGUGG--UCGua--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 102792 0.68 0.775023
Target:  5'- cACGCCccguGCGCCGGCA-GCGaCGCAc -3'
miRNA:   3'- cUGCGGcu--CGUGGUCGUaCGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 102828 0.68 0.765827
Target:  5'- cGACGCCGAGaucgACCuGCGcGCGgACAc -3'
miRNA:   3'- -CUGCGGCUCg---UGGuCGUaCGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 103326 0.7 0.659064
Target:  5'- aGGCGCUGAcGCGCCAGCGccGUGCGg-- -3'
miRNA:   3'- -CUGCGGCU-CGUGGUCGUa-CGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 103500 0.72 0.559407
Target:  5'- uGGCGaaagggCGAGC-CCAGCAgcagGCGCGCGAa -3'
miRNA:   3'- -CUGCg-----GCUCGuGGUCGUa---CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 103583 0.69 0.688894
Target:  5'- -cCGCCGucGGCcCCGGCcgGUGCGCGGg -3'
miRNA:   3'- cuGCGGC--UCGuGGUCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 104056 0.7 0.639061
Target:  5'- cGACGCCGucuGCGCCAGCA--CGUugGu -3'
miRNA:   3'- -CUGCGGCu--CGUGGUCGUacGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 104575 0.67 0.827338
Target:  5'- cACGUCGgcguAGCgGCCGGCGUGCGuCAUGAg -3'
miRNA:   3'- cUGCGGC----UCG-UGGUCGUACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 104736 0.69 0.678985
Target:  5'- uGACGCacacCGAGCccuCCAGCGUggagaugaGCGCGCAGc -3'
miRNA:   3'- -CUGCG----GCUCGu--GGUCGUA--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 109875 0.68 0.765827
Target:  5'- cGGCGgCGGGgcCACCAGUAacUGCGUGCGAc -3'
miRNA:   3'- -CUGCgGCUC--GUGGUCGU--ACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 110459 0.67 0.827338
Target:  5'- uGGCGCUGAGCGCgcaCGGCGccUGCggccGCACGu -3'
miRNA:   3'- -CUGCGGCUCGUG---GUCGU--ACG----CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 110645 0.7 0.669039
Target:  5'- -uCGCCGGGCGCCGGCAcgGU-CACGg -3'
miRNA:   3'- cuGCGGCUCGUGGUCGUa-CGcGUGUu -5'
14235 5' -58.3 NC_003521.1 + 110806 0.71 0.579156
Target:  5'- uGACGCUGAaaGCCAGCGgccguUGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 110838 0.67 0.818999
Target:  5'- -cCGCCGGcGCAgCGGCAgcgacgGUGCACGu -3'
miRNA:   3'- cuGCGGCU-CGUgGUCGUa-----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 111704 0.68 0.747104
Target:  5'- gGACGCCGAcguccaguccguGCGCCGGCAcGCcaccCACAGc -3'
miRNA:   3'- -CUGCGGCU------------CGUGGUCGUaCGc---GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 111753 0.66 0.843499
Target:  5'- uACGCCGAgggucuGCGCCAGCucaGgGCGCc- -3'
miRNA:   3'- cUGCGGCU------CGUGGUCGua-CgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 111931 0.68 0.736637
Target:  5'- cGACGCCGcccucgacuaccuGGCGCggCGGCAggaugagucuguUGCGCACAu -3'
miRNA:   3'- -CUGCGGC-------------UCGUG--GUCGU------------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 112993 0.67 0.79215
Target:  5'- uGGCGCCGGGgcccuucCACgAGC-UGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUC-------GUGgUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 113266 0.73 0.4726
Target:  5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3'
miRNA:   3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 115368 0.67 0.793038
Target:  5'- cGCGUCGcuGGCcaggGCCGGCAUGUGCAgGg -3'
miRNA:   3'- cUGCGGC--UCG----UGGUCGUACGCGUgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.