miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 116367 0.71 0.609035
Target:  5'- cGAgGCCGAGCugCuGC-UGCcGCGCGAc -3'
miRNA:   3'- -CUgCGGCUCGugGuCGuACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 116559 0.67 0.818999
Target:  5'- cGCGcCCGcAGaCACCaAGCAUGcCGCGCGg -3'
miRNA:   3'- cUGC-GGC-UC-GUGG-UCGUAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 117487 0.66 0.880579
Target:  5'- cGGCGaCGGGCcuguCCGGCGggGCGUACGg -3'
miRNA:   3'- -CUGCgGCUCGu---GGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 117883 0.68 0.775023
Target:  5'- cGAgGCCGAGCA-CGGCcggGCGCGgAAa -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGua-CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 117967 0.66 0.851307
Target:  5'- cGGCgGCC-AGCACCAGCGcuacgacgagcUGCGCgACGc -3'
miRNA:   3'- -CUG-CGGcUCGUGGUCGU-----------ACGCG-UGUu -5'
14235 5' -58.3 NC_003521.1 + 119980 0.68 0.784096
Target:  5'- --gGCCGAGU-CCAGCAUG-GCACc- -3'
miRNA:   3'- cugCGGCUCGuGGUCGUACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 121034 0.69 0.727031
Target:  5'- cGGCGCCGAccucgucgccgcuGCGCCGGUcccagGUGUGCugGu -3'
miRNA:   3'- -CUGCGGCU-------------CGUGGUCG-----UACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 121424 0.66 0.858925
Target:  5'- uGCGCaugaaGGGCugCGGguUGCGCGuCAu -3'
miRNA:   3'- cUGCGg----CUCGugGUCguACGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 121840 0.69 0.731844
Target:  5'- uGAUGUCGGGCACguucaccaucuugagCGGCAUgGCGUACAc -3'
miRNA:   3'- -CUGCGGCUCGUG---------------GUCGUA-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 123623 0.68 0.775023
Target:  5'- -cCGCCGuAGCAgCGGCGUGaugauGCGCAGc -3'
miRNA:   3'- cuGCGGC-UCGUgGUCGUACg----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 123937 0.67 0.818999
Target:  5'- -cCGCCGGcGCGCCGccGCAgccgcgccacUGCGCGCGc -3'
miRNA:   3'- cuGCGGCU-CGUGGU--CGU----------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 124534 0.71 0.619036
Target:  5'- --aGCUGuccuccAGCGCCAGCuUGCGCACGu -3'
miRNA:   3'- cugCGGC------UCGUGGUCGuACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 124652 0.67 0.835507
Target:  5'- --gGCCacagGAGCAgCAGCAggUGCGCACc- -3'
miRNA:   3'- cugCGG----CUCGUgGUCGU--ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 125868 0.66 0.880579
Target:  5'- uGACGCCGcAGCAgCCGccGC-UGCGCgaGCAGc -3'
miRNA:   3'- -CUGCGGC-UCGU-GGU--CGuACGCG--UGUU- -5'
14235 5' -58.3 NC_003521.1 + 125968 0.67 0.835507
Target:  5'- gGGCGUC-AGCACCAGUu--CGCACAc -3'
miRNA:   3'- -CUGCGGcUCGUGGUCGuacGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 128409 0.67 0.827338
Target:  5'- gGGCGUCGguccgaaaGGCgGCCGGUcgGCGCACu- -3'
miRNA:   3'- -CUGCGGC--------UCG-UGGUCGuaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 128462 0.76 0.324996
Target:  5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3'
miRNA:   3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 129992 0.75 0.36259
Target:  5'- -cUGCCGcuGCGCCGGCGgcgGCGCGCAAc -3'
miRNA:   3'- cuGCGGCu-CGUGGUCGUa--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 131313 0.66 0.858924
Target:  5'- -cUGCuCGAGCAgCGGCcgGCGCGa-- -3'
miRNA:   3'- cuGCG-GCUCGUgGUCGuaCGCGUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.