miRNA display CGI


Results 61 - 80 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 153496 0.67 0.834697
Target:  5'- --gGCCGucuggucAGCGCCAGCGUGgacCGCACc- -3'
miRNA:   3'- cugCGGC-------UCGUGGUCGUAC---GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 151882 0.69 0.718317
Target:  5'- gGGCGCUGuGCugCAGCAguuucccgaagcUGuCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGugGUCGU------------AC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 149927 0.7 0.668043
Target:  5'- cGACGCCGAcGCAUgCGcaguucaacgugcGCAUGCGCGCu- -3'
miRNA:   3'- -CUGCGGCU-CGUG-GU-------------CGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 149355 0.66 0.843498
Target:  5'- cACGCauacacccgCGAGCugCGcgcGUAUGCGCGCAu -3'
miRNA:   3'- cUGCG---------GCUCGugGU---CGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 147910 0.66 0.851307
Target:  5'- uGGCGCCGucGCugCcGUAUcgaGCGCACGGg -3'
miRNA:   3'- -CUGCGGCu-CGugGuCGUA---CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 147707 0.67 0.827338
Target:  5'- --gGCC-AGCACCAuGUgacccGUGCGCACGAa -3'
miRNA:   3'- cugCGGcUCGUGGU-CG-----UACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 145697 0.66 0.872854
Target:  5'- cGACGCgGAGCuuucaagGCCAcGCucaaGCGCGCGc -3'
miRNA:   3'- -CUGCGgCUCG-------UGGU-CGua--CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 145369 0.75 0.36259
Target:  5'- uGAUGCaCGGGCGCgAGCcgGUGCGCGAc -3'
miRNA:   3'- -CUGCG-GCUCGUGgUCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 145305 0.67 0.818999
Target:  5'- -uCGCCGGGCAuCCAGUucgGCcugaaGCACGAg -3'
miRNA:   3'- cuGCGGCUCGU-GGUCGua-CG-----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 144222 0.66 0.858925
Target:  5'- uGCGCCGAcGCcuGCCuGCucaucauggGCGCGCAGa -3'
miRNA:   3'- cUGCGGCU-CG--UGGuCGua-------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 144174 0.66 0.873567
Target:  5'- cACGCCG-GCGCC-GCcUGcCGCGCGc -3'
miRNA:   3'- cUGCGGCuCGUGGuCGuAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 142921 0.68 0.747104
Target:  5'- cGACGUCGGcGUugCAGCAgcgGCGguCAGg -3'
miRNA:   3'- -CUGCGGCU-CGugGUCGUa--CGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 138012 0.68 0.784096
Target:  5'- cGGCGUCGAgguGCGCguGCGUcgcugccgGCGCACGGg -3'
miRNA:   3'- -CUGCGGCU---CGUGguCGUA--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 137565 0.67 0.835507
Target:  5'- --gGCCGAGCAgCAGUGcaCGCGCGAa -3'
miRNA:   3'- cugCGGCUCGUgGUCGUacGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 137475 0.69 0.678985
Target:  5'- aGugGaaGGGCGCCGGCGUGuCGCGg-- -3'
miRNA:   3'- -CugCggCUCGUGGUCGUAC-GCGUguu -5'
14235 5' -58.3 NC_003521.1 + 137035 0.66 0.843498
Target:  5'- -uCGCCgGAGCACggCGGCGagGUGCGCGAg -3'
miRNA:   3'- cuGCGG-CUCGUG--GUCGUa-CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 136812 0.7 0.659064
Target:  5'- -cCGCCGAcGaCcCCGGCGUGCGCAUg- -3'
miRNA:   3'- cuGCGGCU-C-GuGGUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 136057 0.67 0.793038
Target:  5'- cGAC-CUGGGCAgCGGC-UGCGCGCu- -3'
miRNA:   3'- -CUGcGGCUCGUgGUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 135949 0.66 0.880579
Target:  5'- cGACGCCucGGGCGCCuGCGacaUGagGCACGu -3'
miRNA:   3'- -CUGCGG--CUCGUGGuCGU---ACg-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 135018 0.72 0.539851
Target:  5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3'
miRNA:   3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.