miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 142921 0.68 0.747104
Target:  5'- cGACGUCGGcGUugCAGCAgcgGCGguCAGg -3'
miRNA:   3'- -CUGCGGCU-CGugGUCGUa--CGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 111704 0.68 0.747104
Target:  5'- gGACGCCGAcguccaguccguGCGCCGGCAcGCcaccCACAGc -3'
miRNA:   3'- -CUGCGGCU------------CGUGGUCGUaCGc---GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 186849 0.68 0.756519
Target:  5'- uGGCgGCCcAGCGgCGGCGUGCaGCACGg -3'
miRNA:   3'- -CUG-CGGcUCGUgGUCGUACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 233296 0.68 0.765827
Target:  5'- aGGCGUCGuucGCAaugccccaaaCAGCGUGCGCGCu- -3'
miRNA:   3'- -CUGCGGCu--CGUg---------GUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 239789 0.68 0.774109
Target:  5'- cGACGCCGgccaucuGGCugCgcGGCGugaUGCGCGCGu -3'
miRNA:   3'- -CUGCGGC-------UCGugG--UCGU---ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 117883 0.68 0.775023
Target:  5'- cGAgGCCGAGCA-CGGCcggGCGCGgAAa -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGua-CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 123623 0.68 0.775023
Target:  5'- -cCGCCGuAGCAgCGGCGUGaugauGCGCAGc -3'
miRNA:   3'- cuGCGGC-UCGUgGUCGUACg----CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 121840 0.69 0.731844
Target:  5'- uGAUGUCGGGCACguucaccaucuugagCGGCAUgGCGUACAc -3'
miRNA:   3'- -CUGCGGCUCGUG---------------GUCGUA-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 74118 0.69 0.727995
Target:  5'- cGACGCCcauGGGCGCCGuGCAggacgacgugGCGCGCc- -3'
miRNA:   3'- -CUGCGG---CUCGUGGU-CGUa---------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 28847 0.69 0.727995
Target:  5'- gGACGaCGAGCugCGGCG-GCGCGgCAc -3'
miRNA:   3'- -CUGCgGCUCGugGUCGUaCGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 63887 0.7 0.669039
Target:  5'- cGCGCCggGAGCugCAGCAguUGgGCACc- -3'
miRNA:   3'- cUGCGG--CUCGugGUCGU--ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 137475 0.69 0.678985
Target:  5'- aGugGaaGGGCGCCGGCGUGuCGCGg-- -3'
miRNA:   3'- -CugCggCUCGUGGUCGUAC-GCGUguu -5'
14235 5' -58.3 NC_003521.1 + 169356 0.69 0.678985
Target:  5'- cGCGUCGGcGCGCCAGCAUGUaaGuCACGu -3'
miRNA:   3'- cUGCGGCU-CGUGGUCGUACG--C-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 220060 0.69 0.678985
Target:  5'- aACGCCaggaaggacAGCACCAGCAgcGCGUACAc -3'
miRNA:   3'- cUGCGGc--------UCGUGGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 37058 0.69 0.718317
Target:  5'- gGACGCCGAaaACCGGCAgcugcUGgGCACc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 151882 0.69 0.718317
Target:  5'- gGGCGCUGuGCugCAGCAguuucccgaagcUGuCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGugGUCGU------------AC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 213022 0.69 0.718317
Target:  5'- uGGCGCCGGGCgaGCCGGCcgaGCGgGCc- -3'
miRNA:   3'- -CUGCGGCUCG--UGGUCGua-CGCgUGuu -5'
14235 5' -58.3 NC_003521.1 + 226238 0.69 0.718317
Target:  5'- -gUGCCGuAGC-CCGGCGUGUGCAg-- -3'
miRNA:   3'- cuGCGGC-UCGuGGUCGUACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 121034 0.69 0.727031
Target:  5'- cGGCGCCGAccucgucgccgcuGCGCCGGUcccagGUGUGCugGu -3'
miRNA:   3'- -CUGCGGCU-------------CGUGGUCG-----UACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 222251 0.68 0.784096
Target:  5'- --aGUCGAGCGcgcucuCCAGC-UGCGCGCGc -3'
miRNA:   3'- cugCGGCUCGU------GGUCGuACGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.