miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 144174 0.66 0.873567
Target:  5'- cACGCCG-GCGCC-GCcUGcCGCGCGc -3'
miRNA:   3'- cUGCGGCuCGUGGuCGuAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 222489 0.66 0.873567
Target:  5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3'
miRNA:   3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 223224 0.66 0.873567
Target:  5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3'
miRNA:   3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 56917 0.66 0.878498
Target:  5'- aGCGCCGcAGCACCgccuccagcaccucGGCcucGUGcCGCACGu -3'
miRNA:   3'- cUGCGGC-UCGUGG--------------UCG---UAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 24399 0.66 0.879888
Target:  5'- cGGCGCCGGGC-CCgcggAGCAUagaaagccagacgGCGCAgGGg -3'
miRNA:   3'- -CUGCGGCUCGuGG----UCGUA-------------CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 88839 0.66 0.880579
Target:  5'- cACGCCGccgucguagcacAGCACgGGCGUGCGaacCGAg -3'
miRNA:   3'- cUGCGGC------------UCGUGgUCGUACGCgu-GUU- -5'
14235 5' -58.3 NC_003521.1 + 70334 0.66 0.880579
Target:  5'- uGACGCCGu---CCAGCAggGCGUugAGc -3'
miRNA:   3'- -CUGCGGCucguGGUCGUa-CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 117487 0.66 0.880579
Target:  5'- cGGCGaCGGGCcuguCCGGCGggGCGUACGg -3'
miRNA:   3'- -CUGCgGCUCGu---GGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 135949 0.66 0.880579
Target:  5'- cGACGCCucGGGCGCCuGCGacaUGagGCACGu -3'
miRNA:   3'- -CUGCGG--CUCGUGGuCGU---ACg-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 45903 0.94 0.023531
Target:  5'- cGACG-CGAGCACCAGCAUGCGCACAAa -3'
miRNA:   3'- -CUGCgGCUCGUGGUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 128462 0.76 0.324996
Target:  5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3'
miRNA:   3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 190983 0.75 0.362589
Target:  5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 209102 0.75 0.370461
Target:  5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3'
miRNA:   3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 113266 0.73 0.4726
Target:  5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3'
miRNA:   3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 201386 0.73 0.505273
Target:  5'- cGGCGCCGGGCucgGCCGGCAgcggcauuuucucgGCGCcCAAa -3'
miRNA:   3'- -CUGCGGCUCG---UGGUCGUa-------------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 135018 0.72 0.539851
Target:  5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3'
miRNA:   3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 86237 0.72 0.549602
Target:  5'- uGCGCCGAGCGCguGCGguugagaaucGCGCugAGg -3'
miRNA:   3'- cUGCGGCUCGUGguCGUa---------CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 88010 0.72 0.549602
Target:  5'- cGACGCCGAGCuguaccaccuGCCGGUgaccgaggcgGUGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCG----------UGGUCG----------UACGCGUguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.