miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 37058 0.69 0.718317
Target:  5'- gGACGCCGAaaACCGGCAgcugcUGgGCACc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 151882 0.69 0.718317
Target:  5'- gGGCGCUGuGCugCAGCAguuucccgaagcUGuCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGugGUCGU------------AC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 213022 0.69 0.718317
Target:  5'- uGGCGCCGGGCgaGCCGGCcgaGCGgGCc- -3'
miRNA:   3'- -CUGCGGCUCG--UGGUCGua-CGCgUGuu -5'
14235 5' -58.3 NC_003521.1 + 226238 0.69 0.718317
Target:  5'- -gUGCCGuAGC-CCGGCGUGUGCAg-- -3'
miRNA:   3'- cuGCGGC-UCGuGGUCGUACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 85221 0.68 0.734723
Target:  5'- cGGCGCC--GCGCCggacagagacauggGGCcgGCGCGCAAa -3'
miRNA:   3'- -CUGCGGcuCGUGG--------------UCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 121840 0.69 0.731844
Target:  5'- uGAUGUCGGGCACguucaccaucuugagCGGCAUgGCGUACAc -3'
miRNA:   3'- -CUGCGGCUCGUG---------------GUCGUA-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 74118 0.69 0.727995
Target:  5'- cGACGCCcauGGGCGCCGuGCAggacgacgugGCGCGCc- -3'
miRNA:   3'- -CUGCGG---CUCGUGGU-CGUa---------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 28847 0.69 0.727995
Target:  5'- gGACGaCGAGCugCGGCG-GCGCGgCAc -3'
miRNA:   3'- -CUGCgGCUCGugGUCGUaCGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 121034 0.69 0.727031
Target:  5'- cGGCGCCGAccucgucgccgcuGCGCCGGUcccagGUGUGCugGu -3'
miRNA:   3'- -CUGCGGCU-------------CGUGGUCG-----UACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 88010 0.72 0.549602
Target:  5'- cGACGCCGAGCuguaccaccuGCCGGUgaccgaggcgGUGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCG----------UGGUCG----------UACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 86237 0.72 0.549602
Target:  5'- uGCGCCGAGCGCguGCGguugagaaucGCGCugAGg -3'
miRNA:   3'- cUGCGGCUCGUGguCGUa---------CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 135018 0.72 0.539851
Target:  5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3'
miRNA:   3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 201386 0.73 0.505273
Target:  5'- cGGCGCCGGGCucgGCCGGCAgcggcauuuucucgGCGCcCAAa -3'
miRNA:   3'- -CUGCGGCUCG---UGGUCGUa-------------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 113266 0.73 0.4726
Target:  5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3'
miRNA:   3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 209102 0.75 0.370461
Target:  5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3'
miRNA:   3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 190983 0.75 0.362589
Target:  5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 128462 0.76 0.324996
Target:  5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3'
miRNA:   3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 100590 0.66 0.880579
Target:  5'- cGACGCgGAGggagcCGCCAuCAUGCuGCACGg -3'
miRNA:   3'- -CUGCGgCUC-----GUGGUcGUACG-CGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.