miRNA display CGI


Results 121 - 140 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 166317 0.68 0.743311
Target:  5'- uGAUGCCGcucuGCuCCAGCAgcugcgcgaagucGCGCACAAa -3'
miRNA:   3'- -CUGCGGCu---CGuGGUCGUa------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 181841 0.68 0.747104
Target:  5'- cACGCCGAcCACCAGUgccugacgGCGCGCu- -3'
miRNA:   3'- cUGCGGCUcGUGGUCGua------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 155565 0.68 0.747104
Target:  5'- cGCGCgGAGCggguaGCCAGUuauuUGCGCGCc- -3'
miRNA:   3'- cUGCGgCUCG-----UGGUCGu---ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 102828 0.68 0.765827
Target:  5'- cGACGCCGAGaucgACCuGCGcGCGgACAc -3'
miRNA:   3'- -CUGCGGCUCg---UGGuCGUaCGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 179858 0.71 0.619036
Target:  5'- --gGUCGGGCAUCAGgAUGCgGCACAGc -3'
miRNA:   3'- cugCGGCUCGUGGUCgUACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 26467 0.71 0.609034
Target:  5'- cGugGCCuggGAGCACC-GCcUGCGCGCu- -3'
miRNA:   3'- -CugCGG---CUCGUGGuCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 128462 0.76 0.324996
Target:  5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3'
miRNA:   3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 190983 0.75 0.362589
Target:  5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 209102 0.75 0.370461
Target:  5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3'
miRNA:   3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 113266 0.73 0.4726
Target:  5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3'
miRNA:   3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 201386 0.73 0.505273
Target:  5'- cGGCGCCGGGCucgGCCGGCAgcggcauuuucucgGCGCcCAAa -3'
miRNA:   3'- -CUGCGGCUCG---UGGUCGUa-------------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 135018 0.72 0.539851
Target:  5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3'
miRNA:   3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 86237 0.72 0.549602
Target:  5'- uGCGCCGAGCGCguGCGguugagaaucGCGCugAGg -3'
miRNA:   3'- cUGCGGCUCGUGguCGUa---------CGCGugUU- -5'
14235 5' -58.3 NC_003521.1 + 88010 0.72 0.549602
Target:  5'- cGACGCCGAGCuguaccaccuGCCGGUgaccgaggcgGUGCGCAa-- -3'
miRNA:   3'- -CUGCGGCUCG----------UGGUCG----------UACGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 14677 0.71 0.566299
Target:  5'- cGACGCCGAGUGCCgccgcuggugguggGGCAuccgcgccaaccUGUGCACGc -3'
miRNA:   3'- -CUGCGGCUCGUGG--------------UCGU------------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 168451 0.71 0.56926
Target:  5'- gGACGCCGAGUACgGGCuggGCGagGCGGa -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGua-CGCg-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 110806 0.71 0.579156
Target:  5'- uGACGCUGAaaGCCAGCGgccguUGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 186296 0.71 0.599049
Target:  5'- -cCGCCGGGCcCCAGCG-GCGCcguGCAGa -3'
miRNA:   3'- cuGCGGCUCGuGGUCGUaCGCG---UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.