miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 102792 0.68 0.775023
Target:  5'- cACGCCccguGCGCCGGCA-GCGaCGCAc -3'
miRNA:   3'- cUGCGGcu--CGUGGUCGUaCGC-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 112993 0.67 0.79215
Target:  5'- uGGCGCCGGGgcccuucCACgAGC-UGCGCGCc- -3'
miRNA:   3'- -CUGCGGCUC-------GUGgUCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 168451 0.71 0.56926
Target:  5'- gGACGCCGAGUACgGGCuggGCGagGCGGa -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGua-CGCg-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 26467 0.71 0.609034
Target:  5'- cGugGCCuggGAGCACC-GCcUGCGCGCu- -3'
miRNA:   3'- -CugCGG---CUCGUGGuCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 48237 0.69 0.688894
Target:  5'- cGACGCCGAGCAgCCuGCGUuccGCGgGgGAa -3'
miRNA:   3'- -CUGCGGCUCGU-GGuCGUA---CGCgUgUU- -5'
14235 5' -58.3 NC_003521.1 + 15318 0.69 0.708568
Target:  5'- cGGCGCCGAGCgggugAUCAGC--GCGCugGu -3'
miRNA:   3'- -CUGCGGCUCG-----UGGUCGuaCGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 88664 0.69 0.731844
Target:  5'- cGAUGCUGAGCAUgAGCGaguaccgcgccgaacUGCuGCACGGg -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGU---------------ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 155565 0.68 0.747104
Target:  5'- cGCGCgGAGCggguaGCCAGUuauuUGCGCGCc- -3'
miRNA:   3'- cUGCGgCUCG-----UGGUCGu---ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 131313 0.66 0.858924
Target:  5'- -cUGCuCGAGCAgCGGCcgGCGCGa-- -3'
miRNA:   3'- cuGCG-GCUCGUgGUCGuaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 166749 0.66 0.858924
Target:  5'- --gGCC-AGCACCAGCuggAUGCGguCGAc -3'
miRNA:   3'- cugCGGcUCGUGGUCG---UACGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 76399 0.67 0.801841
Target:  5'- uGGCGCUGcuAGCACCAGCGgcgguguggugGUGCugGc -3'
miRNA:   3'- -CUGCGGC--UCGUGGUCGUa----------CGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 49817 0.67 0.810498
Target:  5'- --gGCUGGGCGCCGuGCAgUGCGCcguGCAGa -3'
miRNA:   3'- cugCGGCUCGUGGU-CGU-ACGCG---UGUU- -5'
14235 5' -58.3 NC_003521.1 + 110838 0.67 0.818999
Target:  5'- -cCGCCGGcGCAgCGGCAgcgacgGUGCACGu -3'
miRNA:   3'- cuGCGGCU-CGUgGUCGUa-----CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 104575 0.67 0.827338
Target:  5'- cACGUCGgcguAGCgGCCGGCGUGCGuCAUGAg -3'
miRNA:   3'- cUGCGGC----UCG-UGGUCGUACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 153496 0.67 0.834697
Target:  5'- --gGCCGucuggucAGCGCCAGCGUGgacCGCACc- -3'
miRNA:   3'- cugCGGC-------UCGUGGUCGUAC---GCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 84179 0.66 0.84112
Target:  5'- uGACGUCGAGCACgAagaggaagcccaggGCGU-CGCGCAGc -3'
miRNA:   3'- -CUGCGGCUCGUGgU--------------CGUAcGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 48714 0.66 0.851307
Target:  5'- cGAgGCCGGGagagguggagaCGCCGGCGacgcUGCaGCACAAg -3'
miRNA:   3'- -CUgCGGCUC-----------GUGGUCGU----ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 147910 0.66 0.851307
Target:  5'- uGGCGCCGucGCugCcGUAUcgaGCGCACGGg -3'
miRNA:   3'- -CUGCGGCu-CGugGuCGUA---CGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.