miRNA display CGI


Results 81 - 100 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 116559 0.67 0.818999
Target:  5'- cGCGcCCGcAGaCACCaAGCAUGcCGCGCGg -3'
miRNA:   3'- cUGC-GGC-UC-GUGG-UCGUAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 123937 0.67 0.818999
Target:  5'- -cCGCCGGcGCGCCGccGCAgccgcgccacUGCGCGCGc -3'
miRNA:   3'- cuGCGGCU-CGUGGU--CGU----------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 128409 0.67 0.827338
Target:  5'- gGGCGUCGguccgaaaGGCgGCCGGUcgGCGCACu- -3'
miRNA:   3'- -CUGCGGC--------UCG-UGGUCGuaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 124652 0.67 0.835507
Target:  5'- --gGCCacagGAGCAgCAGCAggUGCGCACc- -3'
miRNA:   3'- cugCGG----CUCGUgGUCGU--ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 88664 0.69 0.731844
Target:  5'- cGAUGCUGAGCAUgAGCGaguaccgcgccgaacUGCuGCACGGg -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGU---------------ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 26467 0.71 0.609034
Target:  5'- cGugGCCuggGAGCACC-GCcUGCGCGCu- -3'
miRNA:   3'- -CugCGG---CUCGUGGuCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 15318 0.69 0.708568
Target:  5'- cGGCGCCGAGCgggugAUCAGC--GCGCugGu -3'
miRNA:   3'- -CUGCGGCUCG-----UGGUCGuaCGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 48237 0.69 0.688894
Target:  5'- cGACGCCGAGCAgCCuGCGUuccGCGgGgGAa -3'
miRNA:   3'- -CUGCGGCUCGU-GGuCGUA---CGCgUgUU- -5'
14235 5' -58.3 NC_003521.1 + 168451 0.71 0.56926
Target:  5'- gGACGCCGAGUACgGGCuggGCGagGCGGa -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGua-CGCg-UGUU- -5'
14235 5' -58.3 NC_003521.1 + 137475 0.69 0.678985
Target:  5'- aGugGaaGGGCGCCGGCGUGuCGCGg-- -3'
miRNA:   3'- -CugCggCUCGUGGUCGUAC-GCGUguu -5'
14235 5' -58.3 NC_003521.1 + 169356 0.69 0.678985
Target:  5'- cGCGUCGGcGCGCCAGCAUGUaaGuCACGu -3'
miRNA:   3'- cUGCGGCU-CGUGGUCGUACG--C-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 220060 0.69 0.678985
Target:  5'- aACGCCaggaaggacAGCACCAGCAgcGCGUACAc -3'
miRNA:   3'- cUGCGGc--------UCGUGGUCGUa-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 59090 0.72 0.559407
Target:  5'- cGCGCgGccGCuugGCCAGCGUGCGCGCGu -3'
miRNA:   3'- cUGCGgCu-CG---UGGUCGUACGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.