miRNA display CGI


Results 101 - 120 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 228740 0.72 0.549602
Target:  5'- uGCGUggUGAGCAgCGGCGUGCGCAUc- -3'
miRNA:   3'- cUGCG--GCUCGUgGUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 40308 0.72 0.559407
Target:  5'- uGGCGuuGAGCcccuugGCCAGCucgGUGCGCGCc- -3'
miRNA:   3'- -CUGCggCUCG------UGGUCG---UACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 224863 0.67 0.807917
Target:  5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3'
miRNA:   3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 70909 0.67 0.801841
Target:  5'- aGCGCCGucagagccgucAGCGCCAGCAggGUcCACAGc -3'
miRNA:   3'- cUGCGGC-----------UCGUGGUCGUa-CGcGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 70723 0.67 0.801841
Target:  5'- uGCGCCGGauGUACCGGCAcuucguccagcUGCaGCGCGc -3'
miRNA:   3'- cUGCGGCU--CGUGGUCGU-----------ACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 239917 0.67 0.793038
Target:  5'- aACGCCGuGCGCCAGaugGUGCcCAu -3'
miRNA:   3'- cUGCGGCuCGUGGUCguaCGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 115368 0.67 0.793038
Target:  5'- cGCGUCGcuGGCcaggGCCGGCAUGUGCAgGg -3'
miRNA:   3'- cUGCGGC--UCG----UGGUCGUACGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 62222 0.67 0.793038
Target:  5'- gGACGCCGuGCugCAGgAggGCGCcCGg -3'
miRNA:   3'- -CUGCGGCuCGugGUCgUa-CGCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 203857 0.67 0.801841
Target:  5'- -cCGCCGAGCACCcGCuccgcUGCG-ACGAc -3'
miRNA:   3'- cuGCGGCUCGUGGuCGu----ACGCgUGUU- -5'
14235 5' -58.3 NC_003521.1 + 59090 0.72 0.559407
Target:  5'- cGCGCgGccGCuugGCCAGCGUGCGCGCGu -3'
miRNA:   3'- cUGCGgCu-CG---UGGUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 110645 0.7 0.669039
Target:  5'- -uCGCCGGGCGCCGGCAcgGU-CACGg -3'
miRNA:   3'- cuGCGGCUCGUGGUCGUa-CGcGUGUu -5'
14235 5' -58.3 NC_003521.1 + 136812 0.7 0.659064
Target:  5'- -cCGCCGAcGaCcCCGGCGUGCGCAUg- -3'
miRNA:   3'- cuGCGGCU-C-GuGGUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 224551 0.67 0.801841
Target:  5'- cGGCGCCcAGCaggaACCAGCG-GCaGCGCAGc -3'
miRNA:   3'- -CUGCGGcUCG----UGGUCGUaCG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 63887 0.7 0.669039
Target:  5'- cGCGCCggGAGCugCAGCAguUGgGCACc- -3'
miRNA:   3'- cUGCGG--CUCGugGUCGU--ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 137475 0.69 0.678985
Target:  5'- aGugGaaGGGCGCCGGCGUGuCGCGg-- -3'
miRNA:   3'- -CugCggCUCGUGGUCGUAC-GCGUguu -5'
14235 5' -58.3 NC_003521.1 + 169356 0.69 0.678985
Target:  5'- cGCGUCGGcGCGCCAGCAUGUaaGuCACGu -3'
miRNA:   3'- cUGCGGCU-CGUGGUCGUACG--C-GUGUu -5'
14235 5' -58.3 NC_003521.1 + 220060 0.69 0.678985
Target:  5'- aACGCCaggaaggacAGCACCAGCAgcGCGUACAc -3'
miRNA:   3'- cUGCGGc--------UCGUGGUCGUa-CGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.