miRNA display CGI


Results 121 - 140 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 126787 0.67 0.801841
Target:  5'- uGGCGCUGcGCGugguCCAGCuccGCGCGCAc -3'
miRNA:   3'- -CUGCGGCuCGU----GGUCGua-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 212717 0.67 0.801841
Target:  5'- -cCGCCaGGGUACCAGCAUGCa----- -3'
miRNA:   3'- cuGCGG-CUCGUGGUCGUACGcguguu -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 224863 0.67 0.807917
Target:  5'- --gGCCGuagcGCGCCAGCucguccaggugcuugGCGCACAGc -3'
miRNA:   3'- cugCGGCu---CGUGGUCGua-------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 115368 0.67 0.793038
Target:  5'- cGCGUCGcuGGCcaggGCCGGCAUGUGCAgGg -3'
miRNA:   3'- cUGCGGC--UCG----UGGUCGUACGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 53380 0.66 0.863402
Target:  5'- uGACGCgGcGCACCAGCuucugcagcuccuUGCGgGCGu -3'
miRNA:   3'- -CUGCGgCuCGUGGUCGu------------ACGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 88839 0.66 0.880579
Target:  5'- cACGCCGccgucguagcacAGCACgGGCGUGCGaacCGAg -3'
miRNA:   3'- cUGCGGC------------UCGUGgUCGUACGCgu-GUU- -5'
14235 5' -58.3 NC_003521.1 + 24399 0.66 0.879888
Target:  5'- cGGCGCCGGGC-CCgcggAGCAUagaaagccagacgGCGCAgGGg -3'
miRNA:   3'- -CUGCGGCUCGuGG----UCGUA-------------CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 56917 0.66 0.878498
Target:  5'- aGCGCCGcAGCACCgccuccagcaccucGGCcucGUGcCGCACGu -3'
miRNA:   3'- cUGCGGC-UCGUGG--------------UCG---UAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 223224 0.66 0.873567
Target:  5'- uGACGCagguaGAGCcCCugcagcagcgagAGCGUGCGCugGu -3'
miRNA:   3'- -CUGCGg----CUCGuGG------------UCGUACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 222489 0.66 0.873567
Target:  5'- cACGCCGAacugguccaacaGCACCAcGCcgcUGgGCACGAa -3'
miRNA:   3'- cUGCGGCU------------CGUGGU-CGu--ACgCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 144174 0.66 0.873567
Target:  5'- cACGCCG-GCGCC-GCcUGcCGCGCGc -3'
miRNA:   3'- cUGCGGCuCGUGGuCGuAC-GCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 145697 0.66 0.872854
Target:  5'- cGACGCgGAGCuuucaagGCCAcGCucaaGCGCGCGc -3'
miRNA:   3'- -CUGCGgCUCG-------UGGU-CGua--CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 191344 0.66 0.869259
Target:  5'- gGGCGCCGAcgGCCaauaccauaagugugAGCAgaaGCGCGCAGa -3'
miRNA:   3'- -CUGCGGCUcgUGG---------------UCGUa--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 215190 0.66 0.866346
Target:  5'- uGAUGUCGuggucacGCGCCAGCA-GCGC-CAGc -3'
miRNA:   3'- -CUGCGGCu------CGUGGUCGUaCGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 36228 0.66 0.866346
Target:  5'- gGACcCCGAGCaggacuACCGacuGCcgGCGCGCGAc -3'
miRNA:   3'- -CUGcGGCUCG------UGGU---CGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 179499 0.66 0.866346
Target:  5'- aGCGCCGGGgAacacgugucCCAGUAgucccacggGCGCGCAAa -3'
miRNA:   3'- cUGCGGCUCgU---------GGUCGUa--------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 85680 0.66 0.866346
Target:  5'- --aGCCG-GCGuCCAGCAcGCGcCGCAGg -3'
miRNA:   3'- cugCGGCuCGU-GGUCGUaCGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 219147 0.66 0.866346
Target:  5'- aGACagGCaGGGUACCAGCAgGCGcCGCAGc -3'
miRNA:   3'- -CUG--CGgCUCGUGGUCGUaCGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 90857 0.66 0.866346
Target:  5'- uGCGCgGcacAGUGCCAacgcgaagcgcGCAUGCGCACGu -3'
miRNA:   3'- cUGCGgC---UCGUGGU-----------CGUACGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.