Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14235 | 5' | -58.3 | NC_003521.1 | + | 218462 | 0.66 | 0.851307 |
Target: 5'- --gGCCG-GCACCAcGcCGUGgGCGCAGu -3' miRNA: 3'- cugCGGCuCGUGGU-C-GUACgCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 225118 | 0.66 | 0.861917 |
Target: 5'- gGAUGCCGAGCGaCAGCAccuggucgacgugguUGCGgACc- -3' miRNA: 3'- -CUGCGGCUCGUgGUCGU---------------ACGCgUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 53380 | 0.66 | 0.863402 |
Target: 5'- uGACGCgGcGCACCAGCuucugcagcuccuUGCGgGCGu -3' miRNA: 3'- -CUGCGgCuCGUGGUCGu------------ACGCgUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 60328 | 0.66 | 0.851307 |
Target: 5'- cGGCGCUGAuGCAgCCGGCcaaccUGCGCAg-- -3' miRNA: 3'- -CUGCGGCU-CGU-GGUCGu----ACGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 111753 | 0.66 | 0.843499 |
Target: 5'- uACGCCGAgggucuGCGCCAGCucaGgGCGCc- -3' miRNA: 3'- cUGCGGCU------CGUGGUCGua-CgCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 121424 | 0.66 | 0.858925 |
Target: 5'- uGCGCaugaaGGGCugCGGguUGCGCGuCAu -3' miRNA: 3'- cUGCGg----CUCGugGUCguACGCGU-GUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 56796 | 0.66 | 0.858925 |
Target: 5'- --gGCCGcccaACCGGCGUcGCGCGCGAa -3' miRNA: 3'- cugCGGCucg-UGGUCGUA-CGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 18987 | 0.66 | 0.851307 |
Target: 5'- gGACGCCcacAGCgGCCAGC-UGuUGCACAAc -3' miRNA: 3'- -CUGCGGc--UCG-UGGUCGuAC-GCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 65394 | 0.66 | 0.851307 |
Target: 5'- uACGCCGAGCACgccacuCAGac-GCGCGCc- -3' miRNA: 3'- cUGCGGCUCGUG------GUCguaCGCGUGuu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 60172 | 0.66 | 0.851307 |
Target: 5'- aACGCCugGAGCcgcuacagaCAGUGUGCGCGCGGa -3' miRNA: 3'- cUGCGG--CUCGug-------GUCGUACGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 100590 | 0.66 | 0.880579 |
Target: 5'- cGACGCgGAGggagcCGCCAuCAUGCuGCACGg -3' miRNA: 3'- -CUGCGgCUC-----GUGGUcGUACG-CGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 64871 | 0.66 | 0.858925 |
Target: 5'- gGGCGCCGAcguGCGCgAGCuguacgaGCGCuACAAa -3' miRNA: 3'- -CUGCGGCU---CGUGgUCGua-----CGCG-UGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 28737 | 0.66 | 0.843499 |
Target: 5'- cACGCCGAcaACCAGac-GCGCGCGGg -3' miRNA: 3'- cUGCGGCUcgUGGUCguaCGCGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 90857 | 0.66 | 0.866346 |
Target: 5'- uGCGCgGcacAGUGCCAacgcgaagcgcGCAUGCGCACGu -3' miRNA: 3'- cUGCGgC---UCGUGGU-----------CGUACGCGUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 117967 | 0.66 | 0.851307 |
Target: 5'- cGGCgGCC-AGCACCAGCGcuacgacgagcUGCGCgACGc -3' miRNA: 3'- -CUG-CGGcUCGUGGUCGU-----------ACGCG-UGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 39455 | 0.66 | 0.858925 |
Target: 5'- cGGCGCCGAGgGCCGcgucgaaggauuGCGgaucgGCGCAa-- -3' miRNA: 3'- -CUGCGGCUCgUGGU------------CGUa----CGCGUguu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 211108 | 0.66 | 0.858925 |
Target: 5'- cGCGCCGAG-GCuCAGCAgccagGCGC-CGAg -3' miRNA: 3'- cUGCGGCUCgUG-GUCGUa----CGCGuGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 73766 | 0.66 | 0.858925 |
Target: 5'- --gGCCG-GCACCGGCGUcaugaGCGcCACGc -3' miRNA: 3'- cugCGGCuCGUGGUCGUA-----CGC-GUGUu -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 217407 | 0.66 | 0.858925 |
Target: 5'- --gGCUGAGCGgCGGCAUGaagccggugcaGCACAGg -3' miRNA: 3'- cugCGGCUCGUgGUCGUACg----------CGUGUU- -5' |
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14235 | 5' | -58.3 | NC_003521.1 | + | 144222 | 0.66 | 0.858925 |
Target: 5'- uGCGCCGAcGCcuGCCuGCucaucauggGCGCGCAGa -3' miRNA: 3'- cUGCGGCU-CG--UGGuCGua-------CGCGUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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