miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 45903 0.94 0.023531
Target:  5'- cGACG-CGAGCACCAGCAUGCGCACAAa -3'
miRNA:   3'- -CUGCgGCUCGUGGUCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 34585 0.78 0.241111
Target:  5'- uGACGCCGGGCugCAGgc-GCGCGCAGa -3'
miRNA:   3'- -CUGCGGCUCGugGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 77273 0.78 0.258719
Target:  5'- -cCGCCGGGCACCAGCAgggugGaguaGCACAGg -3'
miRNA:   3'- cuGCGGCUCGUGGUCGUa----Cg---CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 211395 0.77 0.303183
Target:  5'- aGGCGCCGGcucucguGCAgCAGCcgGCGCACAu -3'
miRNA:   3'- -CUGCGGCU-------CGUgGUCGuaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 128462 0.76 0.324996
Target:  5'- aGACGCCGcAGcCGCC-GCGUGCGUACGGu -3'
miRNA:   3'- -CUGCGGC-UC-GUGGuCGUACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 71788 0.76 0.347197
Target:  5'- cGCGCCGAGaccagcuugACCGGCGcGCGCACAAa -3'
miRNA:   3'- cUGCGGCUCg--------UGGUCGUaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 216195 0.76 0.347197
Target:  5'- aGGCGCUGAGCACCGGCGcgggguccuccUG-GCACAc -3'
miRNA:   3'- -CUGCGGCUCGUGGUCGU-----------ACgCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 84670 0.76 0.347197
Target:  5'- aGGCGUCGcagcAGCGCCAGCAgcUGCGUGCAc -3'
miRNA:   3'- -CUGCGGC----UCGUGGUCGU--ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 190983 0.75 0.362589
Target:  5'- cGAgGCCGAGCGgCAGCAgGCGCAgGu -3'
miRNA:   3'- -CUgCGGCUCGUgGUCGUaCGCGUgUu -5'
14235 5' -58.3 NC_003521.1 + 129992 0.75 0.36259
Target:  5'- -cUGCCGcuGCGCCGGCGgcgGCGCGCAAc -3'
miRNA:   3'- cuGCGGCu-CGUGGUCGUa--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 145369 0.75 0.36259
Target:  5'- uGAUGCaCGGGCGCgAGCcgGUGCGCGAc -3'
miRNA:   3'- -CUGCG-GCUCGUGgUCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 209102 0.75 0.370461
Target:  5'- gGugGCCGcGGCGucCCAGCAcGCGCACAu -3'
miRNA:   3'- -CugCGGC-UCGU--GGUCGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 54077 0.74 0.437496
Target:  5'- -cCGCCGAGCcCCAGCAUGgGCuCGc -3'
miRNA:   3'- cuGCGGCUCGuGGUCGUACgCGuGUu -5'
14235 5' -58.3 NC_003521.1 + 113266 0.73 0.4726
Target:  5'- uGAuCGCCGAGCACCuggccgacGGCGUGCugccgccGCACAu -3'
miRNA:   3'- -CU-GCGGCUCGUGG--------UCGUACG-------CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 102020 0.73 0.492082
Target:  5'- cGugGuuGAGCACCugGGCcacgGCGCGCAGc -3'
miRNA:   3'- -CugCggCUCGUGG--UCGua--CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 166645 0.73 0.501488
Target:  5'- cGCGCCGGGCGCC-GCG-GCGCAg-- -3'
miRNA:   3'- cUGCGGCUCGUGGuCGUaCGCGUguu -5'
14235 5' -58.3 NC_003521.1 + 201386 0.73 0.505273
Target:  5'- cGGCGCCGGGCucgGCCGGCAgcggcauuuucucgGCGCcCAAa -3'
miRNA:   3'- -CUGCGGCUCG---UGGUCGUa-------------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 74825 0.72 0.520532
Target:  5'- cGGCGCCGAGCGCgaCGGCGUcccgcccucacGCuGCACGAc -3'
miRNA:   3'- -CUGCGGCUCGUG--GUCGUA-----------CG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 135018 0.72 0.539851
Target:  5'- uGGCuGCCGGGCACCguGGCcUGCGuCACGGu -3'
miRNA:   3'- -CUG-CGGCUCGUGG--UCGuACGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.