miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 12259 0.66 0.851307
Target:  5'- -cUGCCGAGCugCAGUccgGUGaacuGCACGGu -3'
miRNA:   3'- cuGCGGCUCGugGUCG---UACg---CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 14677 0.71 0.566299
Target:  5'- cGACGCCGAGUGCCgccgcuggugguggGGCAuccgcgccaaccUGUGCACGc -3'
miRNA:   3'- -CUGCGGCUCGUGG--------------UCGU------------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 14924 0.68 0.784096
Target:  5'- cGGCGCuuCGAGCGCgAGCGgcaGCGC-CAGa -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGUa--CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 15248 0.66 0.851307
Target:  5'- -cCGCCGAGCGCCAGgA--CGaCACGGg -3'
miRNA:   3'- cuGCGGCUCGUGGUCgUacGC-GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 15318 0.69 0.708568
Target:  5'- cGGCGCCGAGCgggugAUCAGC--GCGCugGu -3'
miRNA:   3'- -CUGCGGCUCG-----UGGUCGuaCGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 15752 0.67 0.801841
Target:  5'- uGCGcCCGGGCAgCAGCAUGCccgagcuaCGCGAc -3'
miRNA:   3'- cUGC-GGCUCGUgGUCGUACGc-------GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 16497 0.68 0.765827
Target:  5'- cGACGCuaCGAGCACgGGC-UGCgGCGCu- -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGuACG-CGUGuu -5'
14235 5' -58.3 NC_003521.1 + 16725 0.66 0.880579
Target:  5'- cGCGgCGAGUucggcgaccGCCGGCGcGCGCGCc- -3'
miRNA:   3'- cUGCgGCUCG---------UGGUCGUaCGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 17041 0.67 0.810498
Target:  5'- cGACGacaaCGgcAGCACCAGCA-GCGC-CGAc -3'
miRNA:   3'- -CUGCg---GC--UCGUGGUCGUaCGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 18077 0.72 0.539851
Target:  5'- cGugGCCGuAGC-CCAGacgGCGCGCGAg -3'
miRNA:   3'- -CugCGGC-UCGuGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 18550 0.66 0.851307
Target:  5'- gGGCuCUGGGCACCAuCAcGCGCGCGc -3'
miRNA:   3'- -CUGcGGCUCGUGGUcGUaCGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 18925 0.67 0.801841
Target:  5'- uGGCGCCGcGCGCCGGCAaucCGCcccACAc -3'
miRNA:   3'- -CUGCGGCuCGUGGUCGUac-GCG---UGUu -5'
14235 5' -58.3 NC_003521.1 + 18987 0.66 0.851307
Target:  5'- gGACGCCcacAGCgGCCAGC-UGuUGCACAAc -3'
miRNA:   3'- -CUGCGGc--UCG-UGGUCGuAC-GCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 22431 0.69 0.698758
Target:  5'- cGugGCCGAGUACC-GCccGCGCuuCAc -3'
miRNA:   3'- -CugCGGCUCGUGGuCGuaCGCGu-GUu -5'
14235 5' -58.3 NC_003521.1 + 24399 0.66 0.879888
Target:  5'- cGGCGCCGGGC-CCgcggAGCAUagaaagccagacgGCGCAgGGg -3'
miRNA:   3'- -CUGCGGCUCGuGG----UCGUA-------------CGCGUgUU- -5'
14235 5' -58.3 NC_003521.1 + 26467 0.71 0.609034
Target:  5'- cGugGCCuggGAGCACC-GCcUGCGCGCu- -3'
miRNA:   3'- -CugCGG---CUCGUGGuCGuACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 28737 0.66 0.843499
Target:  5'- cACGCCGAcaACCAGac-GCGCGCGGg -3'
miRNA:   3'- cUGCGGCUcgUGGUCguaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 28847 0.69 0.727995
Target:  5'- gGACGaCGAGCugCGGCG-GCGCGgCAc -3'
miRNA:   3'- -CUGCgGCUCGugGUCGUaCGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 31086 0.67 0.810498
Target:  5'- cGGCuGCCGuGGCugCcGC-UGCGCACGAc -3'
miRNA:   3'- -CUG-CGGC-UCGugGuCGuACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 31366 0.67 0.810498
Target:  5'- --aGCCGcuGCACgucgccggaCAGCAUGCGUACAc -3'
miRNA:   3'- cugCGGCu-CGUG---------GUCGUACGCGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.