miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 3' -55 NC_003521.1 + 45266 0.66 0.963186
Target:  5'- gCUGCUG-GUACUgccACUGGcACCGUGCu -3'
miRNA:   3'- -GACGAUgCAUGGa--UGACCcUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 170498 0.67 0.95976
Target:  5'- cCUGCUggacgGCGUcaccGCCUcgcuGCUGGGcgACCuGCACc -3'
miRNA:   3'- -GACGA-----UGCA----UGGA----UGACCC--UGG-CGUG- -5'
14237 3' -55 NC_003521.1 + 189789 0.67 0.95976
Target:  5'- -gGCcAUGUACaccaucgggCUACUGGGACUGgGCu -3'
miRNA:   3'- gaCGaUGCAUG---------GAUGACCCUGGCgUG- -5'
14237 3' -55 NC_003521.1 + 60684 0.67 0.95976
Target:  5'- gUGCUGCG-GCCgcgcgggggACccgGGGGCgGCGCg -3'
miRNA:   3'- gACGAUGCaUGGa--------UGa--CCCUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 34453 0.67 0.95976
Target:  5'- -cGCUGCGgGCCUGg-GGGucgucGCCGCAg -3'
miRNA:   3'- gaCGAUGCaUGGAUgaCCC-----UGGCGUg -5'
14237 3' -55 NC_003521.1 + 53972 0.67 0.95976
Target:  5'- gUGCUGCacGCCgccGCUGGG-CCGC-Ca -3'
miRNA:   3'- gACGAUGcaUGGa--UGACCCuGGCGuG- -5'
14237 3' -55 NC_003521.1 + 213544 0.67 0.959406
Target:  5'- uCUGCUGCGagACCcgcCUGGccuucguGGCCGCAUc -3'
miRNA:   3'- -GACGAUGCa-UGGau-GACC-------CUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 64194 0.67 0.956121
Target:  5'- aCUGCgucaGCaGUACCUGCUGGccaCGCAg -3'
miRNA:   3'- -GACGa---UG-CAUGGAUGACCcugGCGUg -5'
14237 3' -55 NC_003521.1 + 129535 0.67 0.952264
Target:  5'- -cGCUACaGUGCCcccaGCccgaGGGAgCCGCGCa -3'
miRNA:   3'- gaCGAUG-CAUGGa---UGa---CCCU-GGCGUG- -5'
14237 3' -55 NC_003521.1 + 36386 0.67 0.952264
Target:  5'- gCUGCUuucCGUG-CUGCUGGcGGCaGCGCg -3'
miRNA:   3'- -GACGAu--GCAUgGAUGACC-CUGgCGUG- -5'
14237 3' -55 NC_003521.1 + 16269 0.67 0.952264
Target:  5'- -cGCUGCcgcugGUuCCUGCUGGGcGCCGUg- -3'
miRNA:   3'- gaCGAUG-----CAuGGAUGACCC-UGGCGug -5'
14237 3' -55 NC_003521.1 + 240067 0.67 0.943883
Target:  5'- cCUGCUugGccuCCgGCgUGGGGCuUGCACg -3'
miRNA:   3'- -GACGAugCau-GGaUG-ACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 39840 0.67 0.943883
Target:  5'- cCUGCUugGccuCCgGCgUGGGGCuUGCACg -3'
miRNA:   3'- -GACGAugCau-GGaUG-ACCCUG-GCGUG- -5'
14237 3' -55 NC_003521.1 + 186738 0.68 0.939354
Target:  5'- cCUGCUagGCGaGCCcaUGCUGGGGCUcgGCGg -3'
miRNA:   3'- -GACGA--UGCaUGG--AUGACCCUGG--CGUg -5'
14237 3' -55 NC_003521.1 + 196655 0.68 0.918941
Target:  5'- -aGC-ACGU-CCaGCUGGGugCGCAg -3'
miRNA:   3'- gaCGaUGCAuGGaUGACCCugGCGUg -5'
14237 3' -55 NC_003521.1 + 155900 0.68 0.918383
Target:  5'- gCUGCacgaggaUACGgcCCUGCUGG-ACCGgGCg -3'
miRNA:   3'- -GACG-------AUGCauGGAUGACCcUGGCgUG- -5'
14237 3' -55 NC_003521.1 + 137504 0.68 0.913262
Target:  5'- -cGCUggcGCGUcagcGCCUGCUGGaGuACCgGCGCg -3'
miRNA:   3'- gaCGA---UGCA----UGGAUGACC-C-UGG-CGUG- -5'
14237 3' -55 NC_003521.1 + 61630 0.69 0.907355
Target:  5'- -cGUUcaGCGccuccgGCUUuCUGGGACCGCACu -3'
miRNA:   3'- gaCGA--UGCa-----UGGAuGACCCUGGCGUG- -5'
14237 3' -55 NC_003521.1 + 197140 0.69 0.901221
Target:  5'- uCUGggACGUGgcCCUGCUGGaaguuCCGCGCu -3'
miRNA:   3'- -GACgaUGCAU--GGAUGACCcu---GGCGUG- -5'
14237 3' -55 NC_003521.1 + 65270 0.69 0.899337
Target:  5'- aCUGCUACGUAaauucaaucacgacaUGCUGGGGgCGCu- -3'
miRNA:   3'- -GACGAUGCAUgg-------------AUGACCCUgGCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.