miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14237 5' -61.6 NC_003521.1 + 34434 0.76 0.261576
Target:  5'- cGGUGCGACUCCacguaggcgcugcgGGCCUgGGGGUc -3'
miRNA:   3'- aCCACGCUGAGGga------------CCGGAgCCUCGa -5'
14237 5' -61.6 NC_003521.1 + 223345 0.66 0.775636
Target:  5'- aGGUGC----CCCaGGCCUCGGcGGCg -3'
miRNA:   3'- aCCACGcugaGGGaCCGGAGCC-UCGa -5'
14237 5' -61.6 NC_003521.1 + 113580 0.66 0.775636
Target:  5'- cGGUGgGGCUg---GGCCUCgGGGGCa -3'
miRNA:   3'- aCCACgCUGAgggaCCGGAG-CCUCGa -5'
14237 5' -61.6 NC_003521.1 + 59650 0.66 0.766798
Target:  5'- uUGGUGCGGCagaCgCUGGCgCgccuggaGGAGCUc -3'
miRNA:   3'- -ACCACGCUGa--GgGACCG-Gag-----CCUCGA- -5'
14237 5' -61.6 NC_003521.1 + 101252 0.66 0.766798
Target:  5'- uUGGUgaagcaGCGGCUCCagaggCUGGCC-CaGAGCg -3'
miRNA:   3'- -ACCA------CGCUGAGG-----GACCGGaGcCUCGa -5'
14237 5' -61.6 NC_003521.1 + 163400 0.66 0.757855
Target:  5'- ---gGUGAgUCCCUGGCCUCGcGAc-- -3'
miRNA:   3'- accaCGCUgAGGGACCGGAGC-CUcga -5'
14237 5' -61.6 NC_003521.1 + 17144 0.67 0.709933
Target:  5'- cGGcGCGcuucgcccgaccCUCCCUGGCCaaCGGGGCc -3'
miRNA:   3'- aCCaCGCu-----------GAGGGACCGGa-GCCUCGa -5'
14237 5' -61.6 NC_003521.1 + 73151 0.67 0.692921
Target:  5'- cGGcgGCGGCgccgCCUcGGCCUgcgaccuggacgCGGAGCUg -3'
miRNA:   3'- aCCa-CGCUGa---GGGaCCGGA------------GCCUCGA- -5'
14237 5' -61.6 NC_003521.1 + 128532 0.67 0.692921
Target:  5'- aGGUGCGGCUggCCCgacgucaggUGGCCcuuguaGGAGUUg -3'
miRNA:   3'- aCCACGCUGA--GGG---------ACCGGag----CCUCGA- -5'
14237 5' -61.6 NC_003521.1 + 135240 0.68 0.664265
Target:  5'- aGGUG-GAagUUCUGGCCUCGGAuGCUc -3'
miRNA:   3'- aCCACgCUgaGGGACCGGAGCCU-CGA- -5'
14237 5' -61.6 NC_003521.1 + 139061 0.75 0.266898
Target:  5'- cGGcGCcGCagaucaCCCUGGCCUCGGGGCUg -3'
miRNA:   3'- aCCaCGcUGa-----GGGACCGGAGCCUCGA- -5'
14237 5' -61.6 NC_003521.1 + 145261 0.7 0.503041
Target:  5'- aGG-GCGcCUCCUcGGCCUCGGcGGCc -3'
miRNA:   3'- aCCaCGCuGAGGGaCCGGAGCC-UCGa -5'
14237 5' -61.6 NC_003521.1 + 111282 0.7 0.512177
Target:  5'- ---cGCGGCUCCCUcGGgCUgGGGGCa -3'
miRNA:   3'- accaCGCUGAGGGA-CCgGAgCCUCGa -5'
14237 5' -61.6 NC_003521.1 + 116167 0.69 0.587335
Target:  5'- cGGUGCGcaccugcugcuGCUCCUgUGGCCgCGGAGa- -3'
miRNA:   3'- aCCACGC-----------UGAGGG-ACCGGaGCCUCga -5'
14237 5' -61.6 NC_003521.1 + 235002 0.69 0.587335
Target:  5'- cGGUaGCGGuCcCCCUGGCCUccgCGGAcGCg -3'
miRNA:   3'- aCCA-CGCU-GaGGGACCGGA---GCCU-CGa -5'
14237 5' -61.6 NC_003521.1 + 119847 0.68 0.616137
Target:  5'- cGGUGCGuCggauauccaCCCgGGCCUCGGuccGCa -3'
miRNA:   3'- aCCACGCuGa--------GGGaCCGGAGCCu--CGa -5'
14237 5' -61.6 NC_003521.1 + 117464 0.66 0.78436
Target:  5'- cGGUGCGGCUgUCggaggccacGGCCgCGGcGCUg -3'
miRNA:   3'- aCCACGCUGAgGGa--------CCGGaGCCuCGA- -5'
14237 5' -61.6 NC_003521.1 + 169167 0.72 0.424438
Target:  5'- gUGGUGCGccGCUCCaacucGGCCUCGGucuucaacaucgAGCUg -3'
miRNA:   3'- -ACCACGC--UGAGGga---CCGGAGCC------------UCGA- -5'
14237 5' -61.6 NC_003521.1 + 77602 0.71 0.476076
Target:  5'- ---cGCGAgUCCCaGGCCgcCGGAGCUa -3'
miRNA:   3'- accaCGCUgAGGGaCCGGa-GCCUCGA- -5'
14237 5' -61.6 NC_003521.1 + 25260 0.7 0.512177
Target:  5'- cGGcGCGG-UCCCUGGCCUgGGuGUa -3'
miRNA:   3'- aCCaCGCUgAGGGACCGGAgCCuCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.