Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14237 | 5' | -61.6 | NC_003521.1 | + | 25260 | 0.7 | 0.512177 |
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Target: 5'- cGGcGCGG-UCCCUGGCCUgGGuGUa -3' miRNA: 3'- aCCaCGCUgAGGGACCGGAgCCuCGa -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 111282 | 0.7 | 0.512177 |
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Target: 5'- ---cGCGGCUCCCUcGGgCUgGGGGCa -3' miRNA: 3'- accaCGCUGAGGGA-CCgGAgCCUCGa -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 145261 | 0.7 | 0.503041 |
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Target: 5'- aGG-GCGcCUCCUcGGCCUCGGcGGCc -3' miRNA: 3'- aCCaCGCuGAGGGaCCGGAGCC-UCGa -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 77602 | 0.71 | 0.476076 |
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Target: 5'- ---cGCGAgUCCCaGGCCgcCGGAGCUa -3' miRNA: 3'- accaCGCUgAGGGaCCGGa-GCCUCGA- -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 169167 | 0.72 | 0.424438 |
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Target: 5'- gUGGUGCGccGCUCCaacucGGCCUCGGucuucaacaucgAGCUg -3' miRNA: 3'- -ACCACGC--UGAGGga---CCGGAGCC------------UCGA- -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 139061 | 0.75 | 0.266898 |
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Target: 5'- cGGcGCcGCagaucaCCCUGGCCUCGGGGCUg -3' miRNA: 3'- aCCaCGcUGa-----GGGACCGGAGCCUCGA- -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 34434 | 0.76 | 0.261576 |
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Target: 5'- cGGUGCGACUCCacguaggcgcugcgGGCCUgGGGGUc -3' miRNA: 3'- aCCACGCUGAGGga------------CCGGAgCCUCGa -5' |
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| 14237 | 5' | -61.6 | NC_003521.1 | + | 45178 | 1.07 | 0.001782 |
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Target: 5'- gUGGUGCGACUCCCUGGCCUCGGAGCUg -3' miRNA: 3'- -ACCACGCUGAGGGACCGGAGCCUCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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