miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 3' -55 NC_003521.1 + 196068 0.67 0.971371
Target:  5'- -gCCGGCGAgGUgGAcUGGCgcgagaGCUGCa -3'
miRNA:   3'- gaGGCCGCUgCAgCU-ACUGa-----CGAUGc -5'
14239 3' -55 NC_003521.1 + 129562 0.67 0.968543
Target:  5'- --aCGGCGGgccCGaCGAUGGCUGCUcCGc -3'
miRNA:   3'- gagGCCGCU---GCaGCUACUGACGAuGC- -5'
14239 3' -55 NC_003521.1 + 22960 0.67 0.968543
Target:  5'- gCUCgGGUGcACGUCGu--GCUGCUGgGg -3'
miRNA:   3'- -GAGgCCGC-UGCAGCuacUGACGAUgC- -5'
14239 3' -55 NC_003521.1 + 122653 0.67 0.965521
Target:  5'- -gCCGGCgGGCGUCGu---CUGCgGCGg -3'
miRNA:   3'- gaGGCCG-CUGCAGCuacuGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 151878 0.67 0.965521
Target:  5'- uUCUGGCGGCGcucUCGcucuGUGAUcGCUGCu -3'
miRNA:   3'- gAGGCCGCUGC---AGC----UACUGaCGAUGc -5'
14239 3' -55 NC_003521.1 + 16491 0.67 0.965521
Target:  5'- gUgCGGCGACGcuaCGAgcacgGGCUGCgGCGc -3'
miRNA:   3'- gAgGCCGCUGCa--GCUa----CUGACGaUGC- -5'
14239 3' -55 NC_003521.1 + 90984 0.67 0.965521
Target:  5'- --gCGGCGaACGcCGAUGcuGCUGUUGCa -3'
miRNA:   3'- gagGCCGC-UGCaGCUAC--UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 141363 0.67 0.965521
Target:  5'- gUgCGGCGGCgGUCGGUGACgcgGUgcccgaugACGa -3'
miRNA:   3'- gAgGCCGCUG-CAGCUACUGa--CGa-------UGC- -5'
14239 3' -55 NC_003521.1 + 37091 0.67 0.965521
Target:  5'- -aCCGuGCGACaguGUCGccccGGCUGCUGCu -3'
miRNA:   3'- gaGGC-CGCUG---CAGCua--CUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 27359 0.67 0.9623
Target:  5'- -aCCGGCGcCGUC-AUGACgUGCgACGc -3'
miRNA:   3'- gaGGCCGCuGCAGcUACUG-ACGaUGC- -5'
14239 3' -55 NC_003521.1 + 193685 0.67 0.9623
Target:  5'- --gCGGCGGCGUCu---AUUGCUACGa -3'
miRNA:   3'- gagGCCGCUGCAGcuacUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 138815 0.67 0.9623
Target:  5'- cCUCCauGGCG-CGcCuGAUGGCggcgGCUACGg -3'
miRNA:   3'- -GAGG--CCGCuGCaG-CUACUGa---CGAUGC- -5'
14239 3' -55 NC_003521.1 + 126724 0.67 0.958876
Target:  5'- aUCCgaGGCGGCGcggUCGgcGACaugGCUGCGu -3'
miRNA:   3'- gAGG--CCGCUGC---AGCuaCUGa--CGAUGC- -5'
14239 3' -55 NC_003521.1 + 152088 0.67 0.958876
Target:  5'- --aCGGCGACGUgCGccGGCU-CUGCGa -3'
miRNA:   3'- gagGCCGCUGCA-GCuaCUGAcGAUGC- -5'
14239 3' -55 NC_003521.1 + 197277 0.67 0.958876
Target:  5'- -gCCGGCGGCGgggagCGGgagGGCgGCUcgACGg -3'
miRNA:   3'- gaGGCCGCUGCa----GCUa--CUGaCGA--UGC- -5'
14239 3' -55 NC_003521.1 + 96610 0.68 0.955245
Target:  5'- ---aGGCaGGCGUCGgcGcACUGCUGCa -3'
miRNA:   3'- gaggCCG-CUGCAGCuaC-UGACGAUGc -5'
14239 3' -55 NC_003521.1 + 150832 0.68 0.94307
Target:  5'- -cCCGGCgcaacGACGUgGAuuucUGGCUGUUGCa -3'
miRNA:   3'- gaGGCCG-----CUGCAgCU----ACUGACGAUGc -5'
14239 3' -55 NC_003521.1 + 135243 0.68 0.94307
Target:  5'- -gCCGGCGGCGgCGAcGACacgGCgGCGg -3'
miRNA:   3'- gaGGCCGCUGCaGCUaCUGa--CGaUGC- -5'
14239 3' -55 NC_003521.1 + 140533 0.68 0.942188
Target:  5'- ---aGGCG-CGgcuccacaaaggCGGUGGCUGCUGCGg -3'
miRNA:   3'- gaggCCGCuGCa-----------GCUACUGACGAUGC- -5'
14239 3' -55 NC_003521.1 + 123638 0.68 0.938574
Target:  5'- cCUCgGGCGGCGgcagCGAcGGCggguuagGCUugGa -3'
miRNA:   3'- -GAGgCCGCUGCa---GCUaCUGa------CGAugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.