miRNA display CGI


Results 21 - 40 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 26300 0.66 0.545453
Target:  5'- gGCCaGgGCCaCGCGcuGUcCGCGCUuccagGGCCGGc -3'
miRNA:   3'- -UGG-CgCGG-GCGC--CA-GCGCGG-----CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 201376 0.66 0.545453
Target:  5'- -aCGCgGCCCuCGGcgcCGgGCuCGGCCGGc -3'
miRNA:   3'- ugGCG-CGGGcGCCa--GCgCG-GCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 97260 0.66 0.544571
Target:  5'- cCCGUGCCCgccagcgaugGCGGcugcugcUCGuCGCCGGCgGc -3'
miRNA:   3'- uGGCGCGGG----------CGCC-------AGC-GCGGCCGgCc -5'
14239 5' -68.1 NC_003521.1 + 216354 0.66 0.540168
Target:  5'- cACCGagggugugagGCCCGUGGUcCGCGCgGaccuguuccgagcccGCCGGc -3'
miRNA:   3'- -UGGCg---------CGGGCGCCA-GCGCGgC---------------CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 201541 0.66 0.540168
Target:  5'- uACgGCGCCggcgaCGUGG-CGCGgcuguaucgguccaaCCGGCUGGg -3'
miRNA:   3'- -UGgCGCGG-----GCGCCaGCGC---------------GGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 1313 0.66 0.540168
Target:  5'- uACgGCGCCggcgaCGUGG-CGCGgcuguaucgguccaaCCGGCUGGg -3'
miRNA:   3'- -UGgCGCGG-----GCGCCaGCGC---------------GGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 44424 0.66 0.536654
Target:  5'- uGCCGCuGCCCGCccaUCGUGacggCGGCuCGGc -3'
miRNA:   3'- -UGGCG-CGGGCGcc-AGCGCg---GCCG-GCC- -5'
14239 5' -68.1 NC_003521.1 + 129722 0.66 0.536654
Target:  5'- gGCCGCgGCCCGuCGacgcgagCGCGuCCGcGCCGu -3'
miRNA:   3'- -UGGCG-CGGGC-GCca-----GCGC-GGC-CGGCc -5'
14239 5' -68.1 NC_003521.1 + 128036 0.66 0.536654
Target:  5'- cUCGCGCCgcaCGCGGUagaaguggccgaCGCGCCGcgcgauGCCGc -3'
miRNA:   3'- uGGCGCGG---GCGCCA------------GCGCGGC------CGGCc -5'
14239 5' -68.1 NC_003521.1 + 162630 0.66 0.536654
Target:  5'- cGCCGCGCCCGCuc-CGCacGCCGuuucGCCa- -3'
miRNA:   3'- -UGGCGCGGGCGccaGCG--CGGC----CGGcc -5'
14239 5' -68.1 NC_003521.1 + 181850 0.66 0.536654
Target:  5'- cACCaGUGCCUGaCGGcgcgcuucuUCGCGCCagagGGCCuGGu -3'
miRNA:   3'- -UGG-CGCGGGC-GCC---------AGCGCGG----CCGG-CC- -5'
14239 5' -68.1 NC_003521.1 + 192059 0.66 0.536654
Target:  5'- cGCgGCGUCCGCGG-CgguuugugagGCGUCGGCUu- -3'
miRNA:   3'- -UGgCGCGGGCGCCaG----------CGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 45421 0.66 0.536654
Target:  5'- aGCCgGUGCCCGCcGUCgGCGCggucaUGGCCu- -3'
miRNA:   3'- -UGG-CGCGGGCGcCAG-CGCG-----GCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 140327 0.66 0.536654
Target:  5'- uCCGaCGCCCGCGGU-GCcacCUGGCggCGGu -3'
miRNA:   3'- uGGC-GCGGGCGCCAgCGc--GGCCG--GCC- -5'
14239 5' -68.1 NC_003521.1 + 125790 0.66 0.536654
Target:  5'- aGCCG-GCCUGCgaggcccaggGGUUGUGCgUGGCCGu -3'
miRNA:   3'- -UGGCgCGGGCG----------CCAGCGCG-GCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 135768 0.66 0.536654
Target:  5'- gAUCGCcCCUGgGGcugcUCGCGCaCGGgCGGg -3'
miRNA:   3'- -UGGCGcGGGCgCC----AGCGCG-GCCgGCC- -5'
14239 5' -68.1 NC_003521.1 + 124257 0.66 0.534024
Target:  5'- cGCCGCGCggcaugcuugguguCUGCGGgCGCGagagGGCUGGc -3'
miRNA:   3'- -UGGCGCG--------------GGCGCCaGCGCgg--CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 91922 0.66 0.527905
Target:  5'- uGCCGCGgCgGCGcUCcucgGCGUCGGCCa- -3'
miRNA:   3'- -UGGCGCgGgCGCcAG----CGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 129638 0.66 0.527905
Target:  5'- aGCCcacCGUCCGCGG-CGcCGUCG-CCGGg -3'
miRNA:   3'- -UGGc--GCGGGCGCCaGC-GCGGCcGGCC- -5'
14239 5' -68.1 NC_003521.1 + 144030 0.66 0.527905
Target:  5'- gAUCGUGCCCGUaG-CGcCGCCGcugcuGCCGGc -3'
miRNA:   3'- -UGGCGCGGGCGcCaGC-GCGGC-----CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.