miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1424 5' -53.5 NC_001335.1 + 48378 0.66 0.825978
Target:  5'- cCCACGCCaagGGUGUGGUU-CGg-CCGg -3'
miRNA:   3'- -GGUGUGGgg-CCACAUCAAuGUagGGC- -5'
1424 5' -53.5 NC_001335.1 + 37360 0.66 0.825063
Target:  5'- aCGCGCCCCacagGGUcgcgaugcguucGUGGUUcuccuugGCGUCCCc -3'
miRNA:   3'- gGUGUGGGG----CCA------------CAUCAA-------UGUAGGGc -5'
1424 5' -53.5 NC_001335.1 + 4278 0.67 0.777958
Target:  5'- aCCGgACCcguguCCGGUGUAGgcACuUUCCGc -3'
miRNA:   3'- -GGUgUGG-----GGCCACAUCaaUGuAGGGC- -5'
1424 5' -53.5 NC_001335.1 + 5490 0.67 0.757609
Target:  5'- aCCGcCGCCCCGGcacUGcUGGgcauCGUCCUGa -3'
miRNA:   3'- -GGU-GUGGGGCC---AC-AUCaau-GUAGGGC- -5'
1424 5' -53.5 NC_001335.1 + 37773 0.68 0.704682
Target:  5'- uUCGCGCCggucaCGGUGUAcaccCGUCCCGg -3'
miRNA:   3'- -GGUGUGGg----GCCACAUcaauGUAGGGC- -5'
1424 5' -53.5 NC_001335.1 + 50247 0.68 0.704682
Target:  5'- gCgAUACCUaCGGUGgcGUUGCcgCCCu -3'
miRNA:   3'- -GgUGUGGG-GCCACauCAAUGuaGGGc -5'
1424 5' -53.5 NC_001335.1 + 19708 0.68 0.682931
Target:  5'- uCUugAUgaCCCGGUaGUGGUccauCAUCCCGg -3'
miRNA:   3'- -GGugUG--GGGCCA-CAUCAau--GUAGGGC- -5'
1424 5' -53.5 NC_001335.1 + 8967 0.69 0.660984
Target:  5'- uCCGCGCUgaCGGUgaugggcugaGUGGUUcaACGUCCCGc -3'
miRNA:   3'- -GGUGUGGg-GCCA----------CAUCAA--UGUAGGGC- -5'
1424 5' -53.5 NC_001335.1 + 16371 0.69 0.63893
Target:  5'- aCuCACCCCGGUGUuccaGCAgcucggCCCGa -3'
miRNA:   3'- gGuGUGGGGCCACAucaaUGUa-----GGGC- -5'
1424 5' -53.5 NC_001335.1 + 29089 0.69 0.627888
Target:  5'- aCAUACCCCGGUGUGGa-GCGg-CUGa -3'
miRNA:   3'- gGUGUGGGGCCACAUCaaUGUagGGC- -5'
1424 5' -53.5 NC_001335.1 + 19256 0.7 0.594823
Target:  5'- -uGCGCUCCGGgacagGUAGUUACccUCCGg -3'
miRNA:   3'- ggUGUGGGGCCa----CAUCAAUGuaGGGC- -5'
1424 5' -53.5 NC_001335.1 + 37073 0.74 0.355692
Target:  5'- gCC-CACCuuGGUGUGG-UGCAaCCCGu -3'
miRNA:   3'- -GGuGUGGggCCACAUCaAUGUaGGGC- -5'
1424 5' -53.5 NC_001335.1 + 112 1.12 0.001053
Target:  5'- cCCACACCCCGGUGUAGUUACAUCCCGg -3'
miRNA:   3'- -GGUGUGGGGCCACAUCAAUGUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.