miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14243 3' -52.1 NC_003521.1 + 68442 0.66 0.996665
Target:  5'- -gCGCCCCUc--AACCGCGUGccggUCa- -3'
miRNA:   3'- caGUGGGGAcuuUUGGCGCACa---AGag -5'
14243 3' -52.1 NC_003521.1 + 130382 0.66 0.996612
Target:  5'- cUC-CCCCUGGGcaccaacAACCGCcgcuccGUUCUCa -3'
miRNA:   3'- cAGuGGGGACUU-------UUGGCGca----CAAGAG- -5'
14243 3' -52.1 NC_003521.1 + 131446 0.66 0.995458
Target:  5'- gGUCAUCaacaUGAAGGCCGCGc--UCUCg -3'
miRNA:   3'- -CAGUGGgg--ACUUUUGGCGCacaAGAG- -5'
14243 3' -52.1 NC_003521.1 + 175503 0.66 0.995458
Target:  5'- aUC-UCUCUGGugaaguGCCGCGUGUggUCUCu -3'
miRNA:   3'- cAGuGGGGACUuu----UGGCGCACA--AGAG- -5'
14243 3' -52.1 NC_003521.1 + 127484 0.66 0.994732
Target:  5'- cGUC-CCCCUGGAAGCCcccCGgcgUCUUg -3'
miRNA:   3'- -CAGuGGGGACUUUUGGc--GCacaAGAG- -5'
14243 3' -52.1 NC_003521.1 + 66006 0.66 0.993
Target:  5'- aGUCGCUgCUGGAGAaccCCGUGUGggCg- -3'
miRNA:   3'- -CAGUGGgGACUUUU---GGCGCACaaGag -5'
14243 3' -52.1 NC_003521.1 + 155282 0.67 0.991977
Target:  5'- -aCGCCUCUGAGAugaCGCGgcUGUuccUCUCg -3'
miRNA:   3'- caGUGGGGACUUUug-GCGC--ACA---AGAG- -5'
14243 3' -52.1 NC_003521.1 + 5360 0.67 0.991977
Target:  5'- --aGCCCgUGAGAGggcCCGCGcGUUCUUc -3'
miRNA:   3'- cagUGGGgACUUUU---GGCGCaCAAGAG- -5'
14243 3' -52.1 NC_003521.1 + 24610 0.67 0.98958
Target:  5'- cGUCACCUCaggggcgaggUGAAAACCGCagGUG-UCUa -3'
miRNA:   3'- -CAGUGGGG----------ACUUUUGGCG--CACaAGAg -5'
14243 3' -52.1 NC_003521.1 + 239302 0.67 0.986167
Target:  5'- -cCAuCCCCUGAGGcguucguggucguuGCUGUGUG-UCUCa -3'
miRNA:   3'- caGU-GGGGACUUU--------------UGGCGCACaAGAG- -5'
14243 3' -52.1 NC_003521.1 + 104618 0.68 0.982946
Target:  5'- -aCGCCgCUGAGAACCGCGccgaugaUGUUgaCg -3'
miRNA:   3'- caGUGGgGACUUUUGGCGC-------ACAAgaG- -5'
14243 3' -52.1 NC_003521.1 + 187689 0.68 0.976609
Target:  5'- -gCGCCCUcgGgcGACUGCGUGUaccugaUCUCg -3'
miRNA:   3'- caGUGGGGa-CuuUUGGCGCACA------AGAG- -5'
14243 3' -52.1 NC_003521.1 + 35095 0.69 0.974067
Target:  5'- gGUCugUUCaUGAGAACCGUGUGcgUCUa -3'
miRNA:   3'- -CAGugGGG-ACUUUUGGCGCACa-AGAg -5'
14243 3' -52.1 NC_003521.1 + 98184 0.69 0.968391
Target:  5'- --gACCgCUG-AGGCCGCG-GUUCUCc -3'
miRNA:   3'- cagUGGgGACuUUUGGCGCaCAAGAG- -5'
14243 3' -52.1 NC_003521.1 + 235233 0.69 0.961883
Target:  5'- -gCACCUCU----ACCGCGUGUUCg- -3'
miRNA:   3'- caGUGGGGAcuuuUGGCGCACAAGag -5'
14243 3' -52.1 NC_003521.1 + 117224 0.7 0.958304
Target:  5'- -gCACCCgCUGAcgGCCGCGgcggCUCc -3'
miRNA:   3'- caGUGGG-GACUuuUGGCGCacaaGAG- -5'
14243 3' -52.1 NC_003521.1 + 128751 0.7 0.958304
Target:  5'- -cCGCCCCUGAuccccACCGCGgcGUcCUCc -3'
miRNA:   3'- caGUGGGGACUuu---UGGCGCa-CAaGAG- -5'
14243 3' -52.1 NC_003521.1 + 121562 0.7 0.954501
Target:  5'- -cCACCaCCUGcaucuuGACCacgcGCGUGUUCUCc -3'
miRNA:   3'- caGUGG-GGACuu----UUGG----CGCACAAGAG- -5'
14243 3' -52.1 NC_003521.1 + 216221 0.7 0.950469
Target:  5'- cUCGCCCCUGAGGugaCGCGU--UCUa -3'
miRNA:   3'- cAGUGGGGACUUUug-GCGCAcaAGAg -5'
14243 3' -52.1 NC_003521.1 + 121493 0.71 0.936975
Target:  5'- --gACCCCUGcccGACCGCGUGcgCaUCa -3'
miRNA:   3'- cagUGGGGACuu-UUGGCGCACaaG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.