miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 49730 0.68 0.904185
Target:  5'- uGG-UGGACgaGAcGCAGCC-CGCCGCc -3'
miRNA:   3'- -CCaACCUGg-CUaUGUCGGcGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 131851 0.68 0.92121
Target:  5'- --gUGGGCUGGUucaaggcggccACGGCCaucGUGCCGCGc -3'
miRNA:   3'- ccaACCUGGCUA-----------UGUCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 148083 0.68 0.915753
Target:  5'- uGGUUcaGGACCG-UGCucuGGUCccgGCGCCACGc -3'
miRNA:   3'- -CCAA--CCUGGCuAUG---UCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 123217 0.68 0.923331
Target:  5'- gGGUaGGACgGggGCGGCgguagguggucguaGCGCCGCGc -3'
miRNA:   3'- -CCAaCCUGgCuaUGUCGg-------------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 214991 0.68 0.898076
Target:  5'- aGGggGGugCGAgcCAGCgGCGUCuCGu -3'
miRNA:   3'- -CCaaCCugGCUauGUCGgCGCGGuGC- -5'
14244 3' -56.2 NC_003521.1 + 200650 0.68 0.904185
Target:  5'- --cUGGACCGGcAC-GCCaacGCGCCGCu -3'
miRNA:   3'- ccaACCUGGCUaUGuCGG---CGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 32859 0.68 0.920674
Target:  5'- gGGUcUGGagGCCGAUcgguuugGCGcCCGCGCCGCc -3'
miRNA:   3'- -CCA-ACC--UGGCUA-------UGUcGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 62128 0.68 0.904185
Target:  5'- aGGUcaccUGGuACCuGA-GCGGCCGCGaCCACc -3'
miRNA:   3'- -CCA----ACC-UGG-CUaUGUCGGCGC-GGUGc -5'
14244 3' -56.2 NC_003521.1 + 88490 0.68 0.904185
Target:  5'- aGGgUGGGCgGGUagaGCGGCaCGCGCaGCGa -3'
miRNA:   3'- -CCaACCUGgCUA---UGUCG-GCGCGgUGC- -5'
14244 3' -56.2 NC_003521.1 + 149063 0.68 0.92121
Target:  5'- --cUGGGCuuCGAcGCGGCCGCGCUcucGCa -3'
miRNA:   3'- ccaACCUG--GCUaUGUCGGCGCGG---UGc -5'
14244 3' -56.2 NC_003521.1 + 131413 0.68 0.904185
Target:  5'- --cUGG-CCauGAUGCAGCCGCGCacccugaGCGc -3'
miRNA:   3'- ccaACCuGG--CUAUGUCGGCGCGg------UGC- -5'
14244 3' -56.2 NC_003521.1 + 73763 0.68 0.92121
Target:  5'- --gUGGGCCGGcacCGGCgucaugaGCGCCACGc -3'
miRNA:   3'- ccaACCUGGCUau-GUCGg------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 134596 0.68 0.898076
Target:  5'- ---aGGAUgGAgACGGCCauguGCGCCGCGc -3'
miRNA:   3'- ccaaCCUGgCUaUGUCGG----CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 139669 0.68 0.92121
Target:  5'- ---aGGAgaGGgacGCAGaCCGCGCCGCGc -3'
miRNA:   3'- ccaaCCUggCUa--UGUC-GGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 92167 0.68 0.917962
Target:  5'- uGGUUGGcggccauccccGCCGAgcucgggGCcguuuuucgccgcccGGCCGCGCgACGa -3'
miRNA:   3'- -CCAACC-----------UGGCUa------UG---------------UCGGCGCGgUGC- -5'
14244 3' -56.2 NC_003521.1 + 223465 0.68 0.904185
Target:  5'- --cUGGGCCGccGC-GCCgGCGUCACGg -3'
miRNA:   3'- ccaACCUGGCuaUGuCGG-CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 109700 0.68 0.904185
Target:  5'- gGGUcGcGCUGucccuucccgGCAGCCGCGCCGCc -3'
miRNA:   3'- -CCAaCcUGGCua--------UGUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 98001 0.68 0.904185
Target:  5'- uGUUGGuGCCGAUGCcgaagcccaGGCUGuUGCCACc -3'
miRNA:   3'- cCAACC-UGGCUAUG---------UCGGC-GCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 16962 0.68 0.897454
Target:  5'- --gUGGucCCGAgggACAGCCGCagcagcaGCCGCa -3'
miRNA:   3'- ccaACCu-GGCUa--UGUCGGCG-------CGGUGc -5'
14244 3' -56.2 NC_003521.1 + 77759 0.68 0.898076
Target:  5'- uGGUUGGGCagGAUGUAGUCGCGgCAgGc -3'
miRNA:   3'- -CCAACCUGg-CUAUGUCGGCGCgGUgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.