miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 184480 0.7 0.841859
Target:  5'- aGGUgcUGGugUGcgcccugcGCGGCCGCGCCuCGg -3'
miRNA:   3'- -CCA--ACCugGCua------UGUCGGCGCGGuGC- -5'
14244 3' -56.2 NC_003521.1 + 174510 0.7 0.80937
Target:  5'- ---aGGGCCGcgAUGGCCGCGCUg-- -3'
miRNA:   3'- ccaaCCUGGCuaUGUCGGCGCGGugc -5'
14244 3' -56.2 NC_003521.1 + 50306 0.7 0.833186
Target:  5'- aGGUUucGGGCCGGUACGGCgCGaaucggaCGCCAa- -3'
miRNA:   3'- -CCAA--CCUGGCUAUGUCG-GC-------GCGGUgc -5'
14244 3' -56.2 NC_003521.1 + 126838 0.7 0.825939
Target:  5'- gGGUUGcaGCCGGUGCccGGCCG-GCCGCc -3'
miRNA:   3'- -CCAACc-UGGCUAUG--UCGGCgCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 53957 0.7 0.825939
Target:  5'- --cUGGGCCGAcg-AGCCGUGCUGCa -3'
miRNA:   3'- ccaACCUGGCUaugUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 98531 0.7 0.817732
Target:  5'- cGGcUGGGCCGcUGCAGCgGCGgCGgGu -3'
miRNA:   3'- -CCaACCUGGCuAUGUCGgCGCgGUgC- -5'
14244 3' -56.2 NC_003521.1 + 72732 0.7 0.841859
Target:  5'- uGUUGGAgggcauccgaCCGGUGguGCCGCGCucuaccuccuacCACGa -3'
miRNA:   3'- cCAACCU----------GGCUAUguCGGCGCG------------GUGC- -5'
14244 3' -56.2 NC_003521.1 + 213569 0.7 0.841859
Target:  5'- --gUGcGACCGA--CAGCaGCGCCACGu -3'
miRNA:   3'- ccaAC-CUGGCUauGUCGgCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 115402 0.69 0.878485
Target:  5'- cGGgcGG-CCGccACGGCCuccggacucaGCGCCGCGg -3'
miRNA:   3'- -CCaaCCuGGCuaUGUCGG----------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 59156 0.69 0.864408
Target:  5'- uGG-UGGAUCaGcUGCGGCacgGCGCCGCGg -3'
miRNA:   3'- -CCaACCUGG-CuAUGUCGg--CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 150552 0.69 0.891755
Target:  5'- cGGUggUGGugCGGgugguggcgGCGGCgGCGgCGCGg -3'
miRNA:   3'- -CCA--ACCugGCUa--------UGUCGgCGCgGUGC- -5'
14244 3' -56.2 NC_003521.1 + 178949 0.69 0.891755
Target:  5'- --cUGGAgCGu--CAGCUGCGaCCACGa -3'
miRNA:   3'- ccaACCUgGCuauGUCGGCGC-GGUGC- -5'
14244 3' -56.2 NC_003521.1 + 198606 0.69 0.857077
Target:  5'- aGGUugUGGugCGAUugcgACAGCCGCugGCC-Ca -3'
miRNA:   3'- -CCA--ACCugGCUA----UGUCGGCG--CGGuGc -5'
14244 3' -56.2 NC_003521.1 + 77030 0.69 0.857077
Target:  5'- cGGUUGaGGCCGGcgGUGGUgGCGCCGCu -3'
miRNA:   3'- -CCAAC-CUGGCUa-UGUCGgCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 47433 0.69 0.885223
Target:  5'- ---cGGGCCagggcacAUGCAGCCggGCGCCGCa -3'
miRNA:   3'- ccaaCCUGGc------UAUGUCGG--CGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 18901 0.69 0.857077
Target:  5'- ---aGGcGCCGcgGCAGCCccgaagggugGCGCCGCGc -3'
miRNA:   3'- ccaaCC-UGGCuaUGUCGG----------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 95134 0.69 0.878485
Target:  5'- ---aGGAuaGGguaagGCGGCCGCGCCgACGg -3'
miRNA:   3'- ccaaCCUggCUa----UGUCGGCGCGG-UGC- -5'
14244 3' -56.2 NC_003521.1 + 135765 0.69 0.871545
Target:  5'- ---gGGACCGAaggcgguggcgGCAGUgGCGCUGCGg -3'
miRNA:   3'- ccaaCCUGGCUa----------UGUCGgCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 201666 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 32303 0.69 0.891755
Target:  5'- --aUGGGCCag-ACAGCUGCGgCGCa -3'
miRNA:   3'- ccaACCUGGcuaUGUCGGCGCgGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.