miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 14751 0.69 0.885223
Target:  5'- ---cGGGCCGGccGCGGCCGgGgCGCGc -3'
miRNA:   3'- ccaaCCUGGCUa-UGUCGGCgCgGUGC- -5'
14244 3' -56.2 NC_003521.1 + 200412 0.69 0.871545
Target:  5'- uGG-UGGAcagcaCCGAguucgACAGCgaggUGCGCCACGa -3'
miRNA:   3'- -CCaACCU-----GGCUa----UGUCG----GCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 18901 0.69 0.857077
Target:  5'- ---aGGcGCCGcgGCAGCCccgaagggugGCGCCGCGc -3'
miRNA:   3'- ccaaCC-UGGCuaUGUCGG----------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 77030 0.69 0.857077
Target:  5'- cGGUUGaGGCCGGcgGUGGUgGCGCCGCu -3'
miRNA:   3'- -CCAAC-CUGGCUa-UGUCGgCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 1439 0.69 0.864408
Target:  5'- --cUGGGCCGcg--AGCUGCGCCGCc -3'
miRNA:   3'- ccaACCUGGCuaugUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 98472 0.69 0.864408
Target:  5'- cGGcgGcGGCCGcgGCGGCCGUgGCgGCGg -3'
miRNA:   3'- -CCaaC-CUGGCuaUGUCGGCG-CGgUGC- -5'
14244 3' -56.2 NC_003521.1 + 6727 0.69 0.864408
Target:  5'- uGGUgcaGGGCCuGAcGCAGCCaGCGCuCGCc -3'
miRNA:   3'- -CCAa--CCUGG-CUaUGUCGG-CGCG-GUGc -5'
14244 3' -56.2 NC_003521.1 + 120236 0.69 0.864408
Target:  5'- cGGcaGGAgCCG--GCGGCCGCGCCGu- -3'
miRNA:   3'- -CCaaCCU-GGCuaUGUCGGCGCGGUgc -5'
14244 3' -56.2 NC_003521.1 + 235270 0.69 0.864408
Target:  5'- cGGacGGAacaaCGAUggcgGCGGCCGCGCCGg- -3'
miRNA:   3'- -CCaaCCUg---GCUA----UGUCGGCGCGGUgc -5'
14244 3' -56.2 NC_003521.1 + 188364 0.69 0.891111
Target:  5'- cGGUgaaagGGAUaaCGcgACAGCCGCaacagaagaaaccGCCACGc -3'
miRNA:   3'- -CCAa----CCUG--GCuaUGUCGGCG-------------CGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 223465 0.68 0.904185
Target:  5'- --cUGGGCCGccGC-GCCgGCGUCACGg -3'
miRNA:   3'- ccaACCUGGCuaUGuCGG-CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 148083 0.68 0.915753
Target:  5'- uGGUUcaGGACCG-UGCucuGGUCccgGCGCCACGc -3'
miRNA:   3'- -CCAA--CCUGGCuAUG---UCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 73763 0.68 0.92121
Target:  5'- --gUGGGCCGGcacCGGCgucaugaGCGCCACGc -3'
miRNA:   3'- ccaACCUGGCUau-GUCGg------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 32859 0.68 0.920674
Target:  5'- gGGUcUGGagGCCGAUcgguuugGCGcCCGCGCCGCc -3'
miRNA:   3'- -CCA-ACC--UGGCUA-------UGUcGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 131851 0.68 0.92121
Target:  5'- --gUGGGCUGGUucaaggcggccACGGCCaucGUGCCGCGc -3'
miRNA:   3'- ccaACCUGGCUA-----------UGUCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 149063 0.68 0.92121
Target:  5'- --cUGGGCuuCGAcGCGGCCGCGCUcucGCa -3'
miRNA:   3'- ccaACCUG--GCUaUGUCGGCGCGG---UGc -5'
14244 3' -56.2 NC_003521.1 + 150929 0.68 0.902375
Target:  5'- cGGcgugUGGGCCGAgcgcggucagaucaUcguGCAGUCGCGCgACGc -3'
miRNA:   3'- -CCa---ACCUGGCU--------------A---UGUCGGCGCGgUGC- -5'
14244 3' -56.2 NC_003521.1 + 214991 0.68 0.898076
Target:  5'- aGGggGGugCGAgcCAGCgGCGUCuCGu -3'
miRNA:   3'- -CCaaCCugGCUauGUCGgCGCGGuGC- -5'
14244 3' -56.2 NC_003521.1 + 77759 0.68 0.898076
Target:  5'- uGGUUGGGCagGAUGUAGUCGCGgCAgGc -3'
miRNA:   3'- -CCAACCUGg-CUAUGUCGGCGCgGUgC- -5'
14244 3' -56.2 NC_003521.1 + 134596 0.68 0.898076
Target:  5'- ---aGGAUgGAgACGGCCauguGCGCCGCGc -3'
miRNA:   3'- ccaaCCUGgCUaUGUCGG----CGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.