Results 81 - 100 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14244 | 3' | -56.2 | NC_003521.1 | + | 62128 | 0.68 | 0.904185 |
Target: 5'- aGGUcaccUGGuACCuGA-GCGGCCGCGaCCACc -3' miRNA: 3'- -CCA----ACC-UGG-CUaUGUCGGCGC-GGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 98001 | 0.68 | 0.904185 |
Target: 5'- uGUUGGuGCCGAUGCcgaagcccaGGCUGuUGCCACc -3' miRNA: 3'- cCAACC-UGGCUAUG---------UCGGC-GCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 131413 | 0.68 | 0.904185 |
Target: 5'- --cUGG-CCauGAUGCAGCCGCGCacccugaGCGc -3' miRNA: 3'- ccaACCuGG--CUAUGUCGGCGCGg------UGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 200650 | 0.68 | 0.904185 |
Target: 5'- --cUGGACCGGcAC-GCCaacGCGCCGCu -3' miRNA: 3'- ccaACCUGGCUaUGuCGG---CGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 109700 | 0.68 | 0.904185 |
Target: 5'- gGGUcGcGCUGucccuucccgGCAGCCGCGCCGCc -3' miRNA: 3'- -CCAaCcUGGCua--------UGUCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 60328 | 0.68 | 0.904185 |
Target: 5'- ---cGGcGCUGAUGCAGCCG-GCCAa- -3' miRNA: 3'- ccaaCC-UGGCUAUGUCGGCgCGGUgc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 122858 | 0.68 | 0.915753 |
Target: 5'- cGUaGcGCUGGUGCuGGCCGcCGCCGCGa -3' miRNA: 3'- cCAaCcUGGCUAUG-UCGGC-GCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 148083 | 0.68 | 0.915753 |
Target: 5'- uGGUUcaGGACCG-UGCucuGGUCccgGCGCCACGc -3' miRNA: 3'- -CCAA--CCUGGCuAUG---UCGG---CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 92167 | 0.68 | 0.917962 |
Target: 5'- uGGUUGGcggccauccccGCCGAgcucgggGCcguuuuucgccgcccGGCCGCGCgACGa -3' miRNA: 3'- -CCAACC-----------UGGCUa------UG---------------UCGGCGCGgUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 32859 | 0.68 | 0.920674 |
Target: 5'- gGGUcUGGagGCCGAUcgguuugGCGcCCGCGCCGCc -3' miRNA: 3'- -CCA-ACC--UGGCUA-------UGUcGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 139669 | 0.68 | 0.92121 |
Target: 5'- ---aGGAgaGGgacGCAGaCCGCGCCGCGc -3' miRNA: 3'- ccaaCCUggCUa--UGUC-GGCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 45036 | 0.68 | 0.92121 |
Target: 5'- aGGaaagGGGUCGAg--AGCCGCGCCGCu -3' miRNA: 3'- -CCaa--CCUGGCUaugUCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 131851 | 0.68 | 0.92121 |
Target: 5'- --gUGGGCUGGUucaaggcggccACGGCCaucGUGCCGCGc -3' miRNA: 3'- ccaACCUGGCUA-----------UGUCGG---CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 149063 | 0.68 | 0.92121 |
Target: 5'- --cUGGGCuuCGAcGCGGCCGCGCUcucGCa -3' miRNA: 3'- ccaACCUG--GCUaUGUCGGCGCGG---UGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 73763 | 0.68 | 0.92121 |
Target: 5'- --gUGGGCCGGcacCGGCgucaugaGCGCCACGc -3' miRNA: 3'- ccaACCUGGCUau-GUCGg------CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 123217 | 0.68 | 0.923331 |
Target: 5'- gGGUaGGACgGggGCGGCgguagguggucguaGCGCCGCGc -3' miRNA: 3'- -CCAaCCUGgCuaUGUCGg-------------CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 63069 | 0.67 | 0.925932 |
Target: 5'- ----cGACCGcgaccccGUACAGCUGCGCCGgCGc -3' miRNA: 3'- ccaacCUGGC-------UAUGUCGGCGCGGU-GC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 59648 | 0.67 | 0.926446 |
Target: 5'- cGUUGGugCGGcagacGCuGgCGCGCCugGa -3' miRNA: 3'- cCAACCugGCUa----UGuCgGCGCGGugC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 43472 | 0.67 | 0.926446 |
Target: 5'- ---cGGGCCagcGcgGCGGCCGUgcugGCCGCGg -3' miRNA: 3'- ccaaCCUGG---CuaUGUCGGCG----CGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 156916 | 0.67 | 0.926446 |
Target: 5'- ---cGGGCCGGaGCGGgggacuUCGCGCCACc -3' miRNA: 3'- ccaaCCUGGCUaUGUC------GGCGCGGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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