miRNA display CGI


Results 81 - 100 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 103506 0.74 0.631335
Target:  5'- aGGUgaacucgGGgucGCCGcgcaGCAGCCGCGCCACc -3'
miRNA:   3'- -CCAa------CC---UGGCua--UGUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 103659 0.76 0.534201
Target:  5'- cGGcgGcGGCCGcUGCGGCCGCGgCCAUGg -3'
miRNA:   3'- -CCaaC-CUGGCuAUGUCGGCGC-GGUGC- -5'
14244 3' -56.2 NC_003521.1 + 107325 0.77 0.469394
Target:  5'- gGGUUGGGCCccgcaGCAGCgGCGCCAgGu -3'
miRNA:   3'- -CCAACCUGGcua--UGUCGgCGCGGUgC- -5'
14244 3' -56.2 NC_003521.1 + 109700 0.68 0.904185
Target:  5'- gGGUcGcGCUGucccuucccgGCAGCCGCGCCGCc -3'
miRNA:   3'- -CCAaCcUGGCua--------UGUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 110326 0.72 0.747116
Target:  5'- ---aGGGCCaucauGAcGCGGCCGCGCuCGCGg -3'
miRNA:   3'- ccaaCCUGG-----CUaUGUCGGCGCG-GUGC- -5'
14244 3' -56.2 NC_003521.1 + 110517 0.75 0.582361
Target:  5'- --gUGGACCugGAUGC-GCgGCGCCGCGg -3'
miRNA:   3'- ccaACCUGG--CUAUGuCGgCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 113363 0.66 0.963803
Target:  5'- cGGgccgGGGgCGAggaggaggguUACGGCgGaCGCCGCGg -3'
miRNA:   3'- -CCaa--CCUgGCU----------AUGUCGgC-GCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 113574 0.66 0.969828
Target:  5'- ---aGGACgCGGUGgGGCUGgGCCuCGg -3'
miRNA:   3'- ccaaCCUG-GCUAUgUCGGCgCGGuGC- -5'
14244 3' -56.2 NC_003521.1 + 115402 0.69 0.878485
Target:  5'- cGGgcGG-CCGccACGGCCuccggacucaGCGCCGCGg -3'
miRNA:   3'- -CCaaCCuGGCuaUGUCGG----------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 115511 0.66 0.956983
Target:  5'- uGGccGGACCc--ACcGCCGCGuCCGCGa -3'
miRNA:   3'- -CCaaCCUGGcuaUGuCGGCGC-GGUGC- -5'
14244 3' -56.2 NC_003521.1 + 116367 0.67 0.940835
Target:  5'- ---cGaGGCCGAgcugcUGCuGCCGCGCgACGu -3'
miRNA:   3'- ccaaC-CUGGCU-----AUGuCGGCGCGgUGC- -5'
14244 3' -56.2 NC_003521.1 + 116796 0.66 0.960495
Target:  5'- --cUGG-CCGucUACGGCCGCGaCCcCGa -3'
miRNA:   3'- ccaACCuGGCu-AUGUCGGCGC-GGuGC- -5'
14244 3' -56.2 NC_003521.1 + 118750 0.66 0.956983
Target:  5'- aGGUUGcuGgUGAgucgGCGGCCGUGCgCACGu -3'
miRNA:   3'- -CCAACc-UgGCUa---UGUCGGCGCG-GUGC- -5'
14244 3' -56.2 NC_003521.1 + 120236 0.69 0.864408
Target:  5'- cGGcaGGAgCCG--GCGGCCGCGCCGu- -3'
miRNA:   3'- -CCaaCCU-GGCuaUGUCGGCGCGGUgc -5'
14244 3' -56.2 NC_003521.1 + 120846 0.66 0.963481
Target:  5'- gGGUgccaugcUGGACuCGGccuugagGCGGCCGCGCguCa -3'
miRNA:   3'- -CCA-------ACCUG-GCUa------UGUCGGCGCGguGc -5'
14244 3' -56.2 NC_003521.1 + 122858 0.68 0.915753
Target:  5'- cGUaGcGCUGGUGCuGGCCGcCGCCGCGa -3'
miRNA:   3'- cCAaCcUGGCUAUG-UCGGC-GCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 123217 0.68 0.923331
Target:  5'- gGGUaGGACgGggGCGGCgguagguggucguaGCGCCGCGc -3'
miRNA:   3'- -CCAaCCUGgCuaUGUCGg-------------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 123941 0.76 0.534201
Target:  5'- ---cGGcgcGCCGccGCAGCCGCGCCACu -3'
miRNA:   3'- ccaaCC---UGGCuaUGUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 124029 0.71 0.800859
Target:  5'- gGGUcGcGGCCGuagACGGCCagcGUGCCGCGg -3'
miRNA:   3'- -CCAaC-CUGGCua-UGUCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 124449 0.82 0.270684
Target:  5'- uGGUUGGGCCGcgGCGgcacgcguucgccGCCGCGCuCGCGg -3'
miRNA:   3'- -CCAACCUGGCuaUGU-------------CGGCGCG-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.