miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 142356 0.67 0.936258
Target:  5'- ----cGGCCGccGCGGCCGCcGCCGCc -3'
miRNA:   3'- ccaacCUGGCuaUGUCGGCG-CGGUGc -5'
14244 3' -56.2 NC_003521.1 + 141794 0.66 0.953265
Target:  5'- ---cGGACCGGcccGgAGCCGgCGCCAUc -3'
miRNA:   3'- ccaaCCUGGCUa--UgUCGGC-GCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 139669 0.68 0.92121
Target:  5'- ---aGGAgaGGgacGCAGaCCGCGCCGCGc -3'
miRNA:   3'- ccaaCCUggCUa--UGUC-GGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 138327 0.74 0.650975
Target:  5'- --aUGGACC--UGCGGCUGCGCgACGg -3'
miRNA:   3'- ccaACCUGGcuAUGUCGGCGCGgUGC- -5'
14244 3' -56.2 NC_003521.1 + 138047 0.66 0.966912
Target:  5'- ---cGGcGCCGucaucgcGCAGCCGCuGCCGCu -3'
miRNA:   3'- ccaaCC-UGGCua-----UGUCGGCG-CGGUGc -5'
14244 3' -56.2 NC_003521.1 + 135765 0.69 0.871545
Target:  5'- ---gGGACCGAaggcgguggcgGCAGUgGCGCUGCGg -3'
miRNA:   3'- ccaaCCUGGCUa----------UGUCGgCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 134596 0.68 0.898076
Target:  5'- ---aGGAUgGAgACGGCCauguGCGCCGCGc -3'
miRNA:   3'- ccaaCCUGgCUaUGUCGG----CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 134226 0.66 0.953265
Target:  5'- -cUUGG-CCGAguaGCuGcCCGCGCCGCc -3'
miRNA:   3'- ccAACCuGGCUa--UGuC-GGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 133003 0.67 0.931462
Target:  5'- gGGUUgGGACgGggACAGCCGCcaccGgCACa -3'
miRNA:   3'- -CCAA-CCUGgCuaUGUCGGCG----CgGUGc -5'
14244 3' -56.2 NC_003521.1 + 131851 0.68 0.92121
Target:  5'- --gUGGGCUGGUucaaggcggccACGGCCaucGUGCCGCGc -3'
miRNA:   3'- ccaACCUGGCUA-----------UGUCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 131413 0.68 0.904185
Target:  5'- --cUGG-CCauGAUGCAGCCGCGCacccugaGCGc -3'
miRNA:   3'- ccaACCuGG--CUAUGUCGGCGCGg------UGC- -5'
14244 3' -56.2 NC_003521.1 + 129651 0.71 0.8
Target:  5'- ---cGGcgccgucGCCGggGCGGCCGCGCUAUGc -3'
miRNA:   3'- ccaaCC-------UGGCuaUGUCGGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 129563 0.72 0.736848
Target:  5'- cGGcgGGcCCGAcgauggcUGCuccGCCGCGCCGCGc -3'
miRNA:   3'- -CCaaCCuGGCU-------AUGu--CGGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 128130 0.66 0.963803
Target:  5'- ---gGGuCCGAggGCGGcCCGCGCUcgGCGa -3'
miRNA:   3'- ccaaCCuGGCUa-UGUC-GGCGCGG--UGC- -5'
14244 3' -56.2 NC_003521.1 + 127637 0.72 0.737786
Target:  5'- uGUUGa--CGAUGCAG-CGCGCCACGa -3'
miRNA:   3'- cCAACcugGCUAUGUCgGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 126838 0.7 0.825939
Target:  5'- gGGUUGcaGCCGGUGCccGGCCG-GCCGCc -3'
miRNA:   3'- -CCAACc-UGGCUAUG--UCGGCgCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 124449 0.82 0.270684
Target:  5'- uGGUUGGGCCGcgGCGgcacgcguucgccGCCGCGCuCGCGg -3'
miRNA:   3'- -CCAACCUGGCuaUGU-------------CGGCGCG-GUGC- -5'
14244 3' -56.2 NC_003521.1 + 124029 0.71 0.800859
Target:  5'- gGGUcGcGGCCGuagACGGCCagcGUGCCGCGg -3'
miRNA:   3'- -CCAaC-CUGGCua-UGUCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 123941 0.76 0.534201
Target:  5'- ---cGGcgcGCCGccGCAGCCGCGCCACu -3'
miRNA:   3'- ccaaCC---UGGCuaUGUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 123217 0.68 0.923331
Target:  5'- gGGUaGGACgGggGCGGCgguagguggucguaGCGCCGCGc -3'
miRNA:   3'- -CCAaCCUGgCuaUGUCGg-------------CGCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.