Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14244 | 3' | -56.2 | NC_003521.1 | + | 153652 | 0.73 | 0.690029 |
Target: 5'- cGG-UGGAgCGcugcACGGCCGCGCgCACGa -3' miRNA: 3'- -CCaACCUgGCua--UGUCGGCGCG-GUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 56458 | 0.76 | 0.534201 |
Target: 5'- ---aGGuCCGAgagGC-GCCGCGCCACGg -3' miRNA: 3'- ccaaCCuGGCUa--UGuCGGCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 148422 | 0.76 | 0.524728 |
Target: 5'- --aUGGugCGG-GCGGCCGCGCCGgCGg -3' miRNA: 3'- ccaACCugGCUaUGUCGGCGCGGU-GC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 40605 | 0.77 | 0.460459 |
Target: 5'- uGGUagUGcGCCGGUGCAGCCGCuucucGCCGCa -3' miRNA: 3'- -CCA--ACcUGGCUAUGUCGGCG-----CGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 124449 | 0.82 | 0.270684 |
Target: 5'- uGGUUGGGCCGcgGCGgcacgcguucgccGCCGCGCuCGCGg -3' miRNA: 3'- -CCAACCUGGCuaUGU-------------CGGCGCG-GUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 6084 | 0.7 | 0.80937 |
Target: 5'- ----cGGCCGGUGCGGCgGCguuccGCCACGg -3' miRNA: 3'- ccaacCUGGCUAUGUCGgCG-----CGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 65696 | 0.7 | 0.80937 |
Target: 5'- ---gGGACCaggcaaGAaggACAGCgGCGCCGCGg -3' miRNA: 3'- ccaaCCUGG------CUa--UGUCGgCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 77759 | 0.68 | 0.898076 |
Target: 5'- uGGUUGGGCagGAUGUAGUCGCGgCAgGc -3' miRNA: 3'- -CCAACCUGg-CUAUGUCGGCGCgGUgC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 178949 | 0.69 | 0.891755 |
Target: 5'- --cUGGAgCGu--CAGCUGCGaCCACGa -3' miRNA: 3'- ccaACCUgGCuauGUCGGCGC-GGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 150552 | 0.69 | 0.891755 |
Target: 5'- cGGUggUGGugCGGgugguggcgGCGGCgGCGgCGCGg -3' miRNA: 3'- -CCA--ACCugGCUa--------UGUCGgCGCgGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 32303 | 0.69 | 0.891755 |
Target: 5'- --aUGGGCCag-ACAGCUGCGgCGCa -3' miRNA: 3'- ccaACCUGGcuaUGUCGGCGCgGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 47433 | 0.69 | 0.885223 |
Target: 5'- ---cGGGCCagggcacAUGCAGCCggGCGCCGCa -3' miRNA: 3'- ccaaCCUGGc------UAUGUCGG--CGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 115402 | 0.69 | 0.878485 |
Target: 5'- cGGgcGG-CCGccACGGCCuccggacucaGCGCCGCGg -3' miRNA: 3'- -CCaaCCuGGCuaUGUCGG----------CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 95134 | 0.69 | 0.878485 |
Target: 5'- ---aGGAuaGGguaagGCGGCCGCGCCgACGg -3' miRNA: 3'- ccaaCCUggCUa----UGUCGGCGCGG-UGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 135765 | 0.69 | 0.871545 |
Target: 5'- ---gGGACCGAaggcgguggcgGCAGUgGCGCUGCGg -3' miRNA: 3'- ccaaCCUGGCUa----------UGUCGgCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 201666 | 0.69 | 0.864408 |
Target: 5'- --cUGGGCCGcg--AGCUGCGCCGCc -3' miRNA: 3'- ccaACCUGGCuaugUCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 59156 | 0.69 | 0.864408 |
Target: 5'- uGG-UGGAUCaGcUGCGGCacgGCGCCGCGg -3' miRNA: 3'- -CCaACCUGG-CuAUGUCGg--CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 213569 | 0.7 | 0.841859 |
Target: 5'- --gUGcGACCGA--CAGCaGCGCCACGu -3' miRNA: 3'- ccaAC-CUGGCUauGUCGgCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 59858 | 0.7 | 0.833983 |
Target: 5'- --aUGGGCCGGUcaACGGCgaUGUGCCGCc -3' miRNA: 3'- ccaACCUGGCUA--UGUCG--GCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 211824 | 0.7 | 0.833983 |
Target: 5'- cGGUccgggGGACCGucucguucgcGUACGGCaGCGaCCACGa -3' miRNA: 3'- -CCAa----CCUGGC----------UAUGUCGgCGC-GGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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