Results 61 - 80 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14244 | 3' | -56.2 | NC_003521.1 | + | 59156 | 0.69 | 0.864408 |
Target: 5'- uGG-UGGAUCaGcUGCGGCacgGCGCCGCGg -3' miRNA: 3'- -CCaACCUGG-CuAUGUCGg--CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 201666 | 0.69 | 0.864408 |
Target: 5'- --cUGGGCCGcg--AGCUGCGCCGCc -3' miRNA: 3'- ccaACCUGGCuaugUCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 150929 | 0.68 | 0.902375 |
Target: 5'- cGGcgugUGGGCCGAgcgcggucagaucaUcguGCAGUCGCGCgACGc -3' miRNA: 3'- -CCa---ACCUGGCU--------------A---UGUCGGCGCGgUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 60328 | 0.68 | 0.904185 |
Target: 5'- ---cGGcGCUGAUGCAGCCG-GCCAa- -3' miRNA: 3'- ccaaCC-UGGCUAUGUCGGCgCGGUgc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 73139 | 0.68 | 0.904185 |
Target: 5'- cGGcggGGGCaGcgGCGGCgGCGCCGCc -3' miRNA: 3'- -CCaa-CCUGgCuaUGUCGgCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 88490 | 0.68 | 0.904185 |
Target: 5'- aGGgUGGGCgGGUagaGCGGCaCGCGCaGCGa -3' miRNA: 3'- -CCaACCUGgCUA---UGUCG-GCGCGgUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 223465 | 0.68 | 0.904185 |
Target: 5'- --cUGGGCCGccGC-GCCgGCGUCACGg -3' miRNA: 3'- ccaACCUGGCuaUGuCGG-CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 148083 | 0.68 | 0.915753 |
Target: 5'- uGGUUcaGGACCG-UGCucuGGUCccgGCGCCACGc -3' miRNA: 3'- -CCAA--CCUGGCuAUG---UCGG---CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 32859 | 0.68 | 0.920674 |
Target: 5'- gGGUcUGGagGCCGAUcgguuugGCGcCCGCGCCGCc -3' miRNA: 3'- -CCA-ACC--UGGCUA-------UGUcGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 73763 | 0.68 | 0.92121 |
Target: 5'- --gUGGGCCGGcacCGGCgucaugaGCGCCACGc -3' miRNA: 3'- ccaACCUGGCUau-GUCGg------CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 214991 | 0.68 | 0.898076 |
Target: 5'- aGGggGGugCGAgcCAGCgGCGUCuCGu -3' miRNA: 3'- -CCaaCCugGCUauGUCGgCGCGGuGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 134596 | 0.68 | 0.898076 |
Target: 5'- ---aGGAUgGAgACGGCCauguGCGCCGCGc -3' miRNA: 3'- ccaaCCUGgCUaUGUCGG----CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 135765 | 0.69 | 0.871545 |
Target: 5'- ---gGGACCGAaggcgguggcgGCAGUgGCGCUGCGg -3' miRNA: 3'- ccaaCCUGGCUa----------UGUCGgCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 95134 | 0.69 | 0.878485 |
Target: 5'- ---aGGAuaGGguaagGCGGCCGCGCCgACGg -3' miRNA: 3'- ccaaCCUggCUa----UGUCGGCGCGG-UGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 115402 | 0.69 | 0.878485 |
Target: 5'- cGGgcGG-CCGccACGGCCuccggacucaGCGCCGCGg -3' miRNA: 3'- -CCaaCCuGGCuaUGUCGG----------CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 47433 | 0.69 | 0.885223 |
Target: 5'- ---cGGGCCagggcacAUGCAGCCggGCGCCGCa -3' miRNA: 3'- ccaaCCUGGc------UAUGUCGG--CGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 32303 | 0.69 | 0.891755 |
Target: 5'- --aUGGGCCag-ACAGCUGCGgCGCa -3' miRNA: 3'- ccaACCUGGcuaUGUCGGCGCgGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 150552 | 0.69 | 0.891755 |
Target: 5'- cGGUggUGGugCGGgugguggcgGCGGCgGCGgCGCGg -3' miRNA: 3'- -CCA--ACCugGCUa--------UGUCGgCGCgGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 178949 | 0.69 | 0.891755 |
Target: 5'- --cUGGAgCGu--CAGCUGCGaCCACGa -3' miRNA: 3'- ccaACCUgGCuauGUCGGCGC-GGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 77759 | 0.68 | 0.898076 |
Target: 5'- uGGUUGGGCagGAUGUAGUCGCGgCAgGc -3' miRNA: 3'- -CCAACCUGg-CUAUGUCGGCGCgGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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