Results 21 - 40 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14244 | 3' | -56.2 | NC_003521.1 | + | 53957 | 0.7 | 0.825939 |
Target: 5'- --cUGGGCCGAcg-AGCCGUGCUGCa -3' miRNA: 3'- ccaACCUGGCUaugUCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 129651 | 0.71 | 0.8 |
Target: 5'- ---cGGcgccgucGCCGggGCGGCCGCGCUAUGc -3' miRNA: 3'- ccaaCC-------UGGCuaUGUCGGCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 92638 | 0.73 | 0.699702 |
Target: 5'- --cUGGACuCGGUGCAGCUgguGUGCUACGc -3' miRNA: 3'- ccaACCUG-GCUAUGUCGG---CGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 123941 | 0.76 | 0.534201 |
Target: 5'- ---cGGcgcGCCGccGCAGCCGCGCCACu -3' miRNA: 3'- ccaaCC---UGGCuaUGUCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 6727 | 0.69 | 0.864408 |
Target: 5'- uGGUgcaGGGCCuGAcGCAGCCaGCGCuCGCc -3' miRNA: 3'- -CCAa--CCUGG-CUaUGUCGG-CGCG-GUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 72732 | 0.7 | 0.841859 |
Target: 5'- uGUUGGAgggcauccgaCCGGUGguGCCGCGCucuaccuccuacCACGa -3' miRNA: 3'- cCAACCU----------GGCUAUguCGGCGCG------------GUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 172393 | 0.72 | 0.747116 |
Target: 5'- cGGUUGaGgggcGCCGGcGgAGCCGuCGCCGCGg -3' miRNA: 3'- -CCAAC-C----UGGCUaUgUCGGC-GCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 103659 | 0.76 | 0.534201 |
Target: 5'- cGGcgGcGGCCGcUGCGGCCGCGgCCAUGg -3' miRNA: 3'- -CCaaC-CUGGCuAUGUCGGCGC-GGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 184480 | 0.7 | 0.841859 |
Target: 5'- aGGUgcUGGugUGcgcccugcGCGGCCGCGCCuCGg -3' miRNA: 3'- -CCA--ACCugGCua------UGUCGGCGCGGuGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 107325 | 0.77 | 0.469394 |
Target: 5'- gGGUUGGGCCccgcaGCAGCgGCGCCAgGu -3' miRNA: 3'- -CCAACCUGGcua--UGUCGgCGCGGUgC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 170665 | 0.71 | 0.792208 |
Target: 5'- --gUGGACUcguGAUagGCAGCCGCGCuCGCc -3' miRNA: 3'- ccaACCUGG---CUA--UGUCGGCGCG-GUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 126838 | 0.7 | 0.825939 |
Target: 5'- gGGUUGcaGCCGGUGCccGGCCG-GCCGCc -3' miRNA: 3'- -CCAACc-UGGCUAUG--UCGGCgCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 76372 | 0.72 | 0.737786 |
Target: 5'- cGGc--GACCGugACGGCCGCGgCCGCGg -3' miRNA: 3'- -CCaacCUGGCuaUGUCGGCGC-GGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 181938 | 0.72 | 0.709321 |
Target: 5'- ---cGGGCUGcgACucGCCGCGCCACc -3' miRNA: 3'- ccaaCCUGGCuaUGu-CGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 180805 | 0.73 | 0.660778 |
Target: 5'- aGGUgaGGCCGGUGCuGUCGCGCUGCu -3' miRNA: 3'- -CCAacCUGGCUAUGuCGGCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 110517 | 0.75 | 0.582361 |
Target: 5'- --gUGGACCugGAUGC-GCgGCGCCGCGg -3' miRNA: 3'- ccaACCUGG--CUAUGuCGgCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 200412 | 0.69 | 0.871545 |
Target: 5'- uGG-UGGAcagcaCCGAguucgACAGCgaggUGCGCCACGa -3' miRNA: 3'- -CCaACCU-----GGCUa----UGUCG----GCGCGGUGC- -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 120236 | 0.69 | 0.864408 |
Target: 5'- cGGcaGGAgCCG--GCGGCCGCGCCGu- -3' miRNA: 3'- -CCaaCCU-GGCuaUGUCGGCGCGGUgc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 77030 | 0.69 | 0.857077 |
Target: 5'- cGGUUGaGGCCGGcgGUGGUgGCGCCGCu -3' miRNA: 3'- -CCAAC-CUGGCUa-UGUCGgCGCGGUGc -5' |
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14244 | 3' | -56.2 | NC_003521.1 | + | 155253 | 0.7 | 0.849559 |
Target: 5'- uGGUgggGGGCgGcgGCGGCgGCGCCuCa -3' miRNA: 3'- -CCAa--CCUGgCuaUGUCGgCGCGGuGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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