miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 120236 0.69 0.864408
Target:  5'- cGGcaGGAgCCG--GCGGCCGCGCCGu- -3'
miRNA:   3'- -CCaaCCU-GGCuaUGUCGGCGCGGUgc -5'
14244 3' -56.2 NC_003521.1 + 188364 0.69 0.891111
Target:  5'- cGGUgaaagGGAUaaCGcgACAGCCGCaacagaagaaaccGCCACGc -3'
miRNA:   3'- -CCAa----CCUG--GCuaUGUCGGCG-------------CGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 103506 0.74 0.631335
Target:  5'- aGGUgaacucgGGgucGCCGcgcaGCAGCCGCGCCACc -3'
miRNA:   3'- -CCAa------CC---UGGCua--UGUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 155922 0.73 0.660778
Target:  5'- --cUGGACCGGgcgcugACGGCCuacucGCGCCACc -3'
miRNA:   3'- ccaACCUGGCUa-----UGUCGG-----CGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 167205 0.72 0.728372
Target:  5'- -cUUGGGCUG--GCAGgCGCGCCGCa -3'
miRNA:   3'- ccAACCUGGCuaUGUCgGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 110326 0.72 0.747116
Target:  5'- ---aGGGCCaucauGAcGCGGCCGCGCuCGCGg -3'
miRNA:   3'- ccaaCCUGG-----CUaUGUCGGCGCG-GUGC- -5'
14244 3' -56.2 NC_003521.1 + 124029 0.71 0.800859
Target:  5'- gGGUcGcGGCCGuagACGGCCagcGUGCCGCGg -3'
miRNA:   3'- -CCAaC-CUGGCua-UGUCGG---CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 126838 0.7 0.825939
Target:  5'- gGGUUGcaGCCGGUGCccGGCCG-GCCGCc -3'
miRNA:   3'- -CCAACc-UGGCUAUG--UCGGCgCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 72732 0.7 0.841859
Target:  5'- uGUUGGAgggcauccgaCCGGUGguGCCGCGCucuaccuccuacCACGa -3'
miRNA:   3'- cCAACCU----------GGCUAUguCGGCGCG------------GUGC- -5'
14244 3' -56.2 NC_003521.1 + 198606 0.69 0.857077
Target:  5'- aGGUugUGGugCGAUugcgACAGCCGCugGCC-Ca -3'
miRNA:   3'- -CCA--ACCugGCUA----UGUCGGCG--CGGuGc -5'
14244 3' -56.2 NC_003521.1 + 138047 0.66 0.966912
Target:  5'- ---cGGcGCCGucaucgcGCAGCCGCuGCCGCu -3'
miRNA:   3'- ccaaCC-UGGCua-----UGUCGGCG-CGGUGc -5'
14244 3' -56.2 NC_003521.1 + 27679 0.66 0.962831
Target:  5'- --cUGGACCaAcgucuucaguucgcUGCGGCCGCaCCACGc -3'
miRNA:   3'- ccaACCUGGcU--------------AUGUCGGCGcGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 62128 0.68 0.904185
Target:  5'- aGGUcaccUGGuACCuGA-GCGGCCGCGaCCACc -3'
miRNA:   3'- -CCA----ACC-UGG-CUaUGUCGGCGC-GGUGc -5'
14244 3' -56.2 NC_003521.1 + 98421 0.68 0.904185
Target:  5'- cGUUGG-CCaggGCGGCCaGgGCCGCGg -3'
miRNA:   3'- cCAACCuGGcuaUGUCGG-CgCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 45036 0.68 0.92121
Target:  5'- aGGaaagGGGUCGAg--AGCCGCGCCGCu -3'
miRNA:   3'- -CCaa--CCUGGCUaugUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 171312 0.67 0.931462
Target:  5'- cGGUgcUGGGCCucaacGCGGCCuGCGCCGu- -3'
miRNA:   3'- -CCA--ACCUGGcua--UGUCGG-CGCGGUgc -5'
14244 3' -56.2 NC_003521.1 + 178743 0.67 0.940834
Target:  5'- cGGUUGGACUGGU-C-GCaCGUGgCCugGa -3'
miRNA:   3'- -CCAACCUGGCUAuGuCG-GCGC-GGugC- -5'
14244 3' -56.2 NC_003521.1 + 23972 0.67 0.945193
Target:  5'- ---cGGGCCuGGaACAGUCGUccGCCGCGg -3'
miRNA:   3'- ccaaCCUGG-CUaUGUCGGCG--CGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 36765 0.66 0.952108
Target:  5'- --gUGGugCGAcUGCGGCgacuggcagggccaCGCGCUGCGg -3'
miRNA:   3'- ccaACCugGCU-AUGUCG--------------GCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 115511 0.66 0.956983
Target:  5'- uGGccGGACCc--ACcGCCGCGuCCGCGa -3'
miRNA:   3'- -CCaaCCUGGcuaUGuCGGCGC-GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.