miRNA display CGI


Results 81 - 100 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14244 3' -56.2 NC_003521.1 + 208716 0.69 0.891755
Target:  5'- ------cCCGAgauCAGCCGCGCCGCc -3'
miRNA:   3'- ccaaccuGGCUau-GUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 196462 0.69 0.871545
Target:  5'- cGGgcgUGGGCC---GCAGCCccagcGCGUCGCGg -3'
miRNA:   3'- -CCa--ACCUGGcuaUGUCGG-----CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 6727 0.69 0.864408
Target:  5'- uGGUgcaGGGCCuGAcGCAGCCaGCGCuCGCc -3'
miRNA:   3'- -CCAa--CCUGG-CUaUGUCGG-CGCG-GUGc -5'
14244 3' -56.2 NC_003521.1 + 18901 0.69 0.857077
Target:  5'- ---aGGcGCCGcgGCAGCCccgaagggugGCGCCGCGc -3'
miRNA:   3'- ccaaCC-UGGCuaUGUCGG----------CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 184480 0.7 0.841859
Target:  5'- aGGUgcUGGugUGcgcccugcGCGGCCGCGCCuCGg -3'
miRNA:   3'- -CCA--ACCugGCua------UGUCGGCGCGGuGC- -5'
14244 3' -56.2 NC_003521.1 + 53957 0.7 0.825939
Target:  5'- --cUGGGCCGAcg-AGCCGUGCUGCa -3'
miRNA:   3'- ccaACCUGGCUaugUCGGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 129651 0.71 0.8
Target:  5'- ---cGGcgccgucGCCGggGCGGCCGCGCUAUGc -3'
miRNA:   3'- ccaaCC-------UGGCuaUGUCGGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 187607 0.67 0.945193
Target:  5'- cGG-UGGGCaCGGccUGCcgggcgAGCCGgGCCGCGc -3'
miRNA:   3'- -CCaACCUG-GCU--AUG------UCGGCgCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 7634 0.67 0.945193
Target:  5'- cGGgaacGACCGAcgguaACGGCgGcCGCCACGg -3'
miRNA:   3'- -CCaac-CUGGCUa----UGUCGgC-GCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 226807 0.67 0.945193
Target:  5'- cGUaGGACCug-ACGGUacaGCGCCAUGg -3'
miRNA:   3'- cCAaCCUGGcuaUGUCGg--CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 32078 0.67 0.949336
Target:  5'- --cUGGcCCGuggccACGGCCaGCGCCAUGc -3'
miRNA:   3'- ccaACCuGGCua---UGUCGG-CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 166793 0.67 0.949336
Target:  5'- gGGUcGGA-CGAUGCcGCCGcCGCUGCu -3'
miRNA:   3'- -CCAaCCUgGCUAUGuCGGC-GCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 134596 0.68 0.898076
Target:  5'- ---aGGAUgGAgACGGCCauguGCGCCGCGc -3'
miRNA:   3'- ccaaCCUGgCUaUGUCGG----CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 214991 0.68 0.898076
Target:  5'- aGGggGGugCGAgcCAGCgGCGUCuCGu -3'
miRNA:   3'- -CCaaCCugGCUauGUCGgCGCGGuGC- -5'
14244 3' -56.2 NC_003521.1 + 951 0.66 0.956983
Target:  5'- uGGaacgUGGuCCGcUGCAGaggaaugggcuuCCGCGCCACc -3'
miRNA:   3'- -CCa---ACCuGGCuAUGUC------------GGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 70728 0.66 0.956621
Target:  5'- cGGaUGuACCGGcacuucguccagcUGCAG-CGCGCCGCGg -3'
miRNA:   3'- -CCaACcUGGCU-------------AUGUCgGCGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 6084 0.7 0.80937
Target:  5'- ----cGGCCGGUGCGGCgGCguuccGCCACGg -3'
miRNA:   3'- ccaacCUGGCUAUGUCGgCG-----CGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 134226 0.66 0.953265
Target:  5'- -cUUGG-CCGAguaGCuGcCCGCGCCGCc -3'
miRNA:   3'- ccAACCuGGCUa--UGuC-GGCGCGGUGc -5'
14244 3' -56.2 NC_003521.1 + 74159 0.66 0.953265
Target:  5'- ---gGGGCCcaGGUGCcgcuGGCCgacuGCGCCGCGg -3'
miRNA:   3'- ccaaCCUGG--CUAUG----UCGG----CGCGGUGC- -5'
14244 3' -56.2 NC_003521.1 + 51122 0.66 0.953265
Target:  5'- cGGgaGGGCUGGUugagACAGCacgaGCGCaGCGa -3'
miRNA:   3'- -CCaaCCUGGCUA----UGUCGg---CGCGgUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.