miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14247 3' -52.8 NC_003521.1 + 99349 0.66 0.993029
Target:  5'- aGGAGGaagGCGGugaGGCUGcUGUUGUUGc -3'
miRNA:   3'- -CCUCCacaUGCC---CCGAC-ACAAUAGCa -5'
14247 3' -52.8 NC_003521.1 + 208409 0.66 0.992025
Target:  5'- aGGAGGccGUGCGccacGGGCUGcUG-UGUCGc -3'
miRNA:   3'- -CCUCCa-CAUGC----CCCGAC-ACaAUAGCa -5'
14247 3' -52.8 NC_003521.1 + 69137 0.66 0.992025
Target:  5'- cGGuGGGUGgcaGCGGGGCgGUGUacAUCu- -3'
miRNA:   3'- -CC-UCCACa--UGCCCCGaCACAa-UAGca -5'
14247 3' -52.8 NC_003521.1 + 164198 0.66 0.992025
Target:  5'- aGGAGGcGgaacgGCGGGGCggcgGUGguagCGg -3'
miRNA:   3'- -CCUCCaCa----UGCCCCGa---CACaauaGCa -5'
14247 3' -52.8 NC_003521.1 + 98727 0.67 0.989546
Target:  5'- cGGAGG-GUaccugccGCGGGGgUG-GUcGUCGUa -3'
miRNA:   3'- -CCUCCaCA-------UGCCCCgACaCAaUAGCA- -5'
14247 3' -52.8 NC_003521.1 + 92090 0.67 0.988315
Target:  5'- gGGGGGUGcGCaGGGCgGUGccccggGUCGg -3'
miRNA:   3'- -CCUCCACaUGcCCCGaCACaa----UAGCa -5'
14247 3' -52.8 NC_003521.1 + 59243 0.67 0.986819
Target:  5'- uGGAGGUGaACguGGGGCUGcUGcgggcguUCGUa -3'
miRNA:   3'- -CCUCCACaUG--CCCCGAC-ACaau----AGCA- -5'
14247 3' -52.8 NC_003521.1 + 19958 0.68 0.981439
Target:  5'- uGAGGUG-GCcGGGCUGgcgGUgAUCGUg -3'
miRNA:   3'- cCUCCACaUGcCCCGACa--CAaUAGCA- -5'
14247 3' -52.8 NC_003521.1 + 115441 0.68 0.979323
Target:  5'- cGGGGGUG-ACGGuGGUUGUGcgGaCGg -3'
miRNA:   3'- -CCUCCACaUGCC-CCGACACaaUaGCa -5'
14247 3' -52.8 NC_003521.1 + 94384 0.76 0.676151
Target:  5'- aGGAGGUGU--GGGGCa-UGUUAUCGUa -3'
miRNA:   3'- -CCUCCACAugCCCCGacACAAUAGCA- -5'
14247 3' -52.8 NC_003521.1 + 169628 0.83 0.350328
Target:  5'- uGGAGGUGUACGGuGCUGuUGUgGUCGUa -3'
miRNA:   3'- -CCUCCACAUGCCcCGAC-ACAaUAGCA- -5'
14247 3' -52.8 NC_003521.1 + 34139 0.96 0.068011
Target:  5'- gGGAGGUGUACGGGGCUGUugUAUCGUc -3'
miRNA:   3'- -CCUCCACAUGCCCCGACAcaAUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.