miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14247 5' -53.5 NC_003521.1 + 157120 0.66 0.991088
Target:  5'- gGACcccuugGACG-CCCgCUcGCGCGUCCAc -3'
miRNA:   3'- gCUGua----UUGUaGGGgGA-CGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 34368 0.66 0.991088
Target:  5'- cCGAUggGGCaAUCCCCCgccCACGUCa- -3'
miRNA:   3'- -GCUGuaUUG-UAGGGGGac-GUGCAGgu -5'
14247 5' -53.5 NC_003521.1 + 152172 0.66 0.989874
Target:  5'- cCGACcUGGCggCCCUCUGCGCcUCg- -3'
miRNA:   3'- -GCUGuAUUGuaGGGGGACGUGcAGgu -5'
14247 5' -53.5 NC_003521.1 + 198860 0.66 0.989874
Target:  5'- gCGGCGgucgAACAgcugCCCCCggaUGCACuGUCgCAg -3'
miRNA:   3'- -GCUGUa---UUGUa---GGGGG---ACGUG-CAG-GU- -5'
14247 5' -53.5 NC_003521.1 + 5237 0.66 0.989874
Target:  5'- cCGcCucu-CGUCCUCCcGCACGUCCc -3'
miRNA:   3'- -GCuGuauuGUAGGGGGaCGUGCAGGu -5'
14247 5' -53.5 NC_003521.1 + 34708 0.66 0.989874
Target:  5'- aGGCGaaGACggCgCCgUGCGCGUCCAc -3'
miRNA:   3'- gCUGUa-UUGuaGgGGgACGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 191967 0.66 0.989874
Target:  5'- aCGACGagGACAacgaggcuuUCCUCCcGCGCGUCa- -3'
miRNA:   3'- -GCUGUa-UUGU---------AGGGGGaCGUGCAGgu -5'
14247 5' -53.5 NC_003521.1 + 127178 0.66 0.989874
Target:  5'- cCGGCAUGaggcACAgguagaagaCCUUCUGCAgCGUCCAc -3'
miRNA:   3'- -GCUGUAU----UGUa--------GGGGGACGU-GCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 37295 0.66 0.988534
Target:  5'- uGACAcAGCugcgccUCCgUCUGCACGUCUc -3'
miRNA:   3'- gCUGUaUUGu-----AGGgGGACGUGCAGGu -5'
14247 5' -53.5 NC_003521.1 + 101114 0.66 0.98706
Target:  5'- aGcCGUGACcaagAUCCCCgUGCugG-CCAa -3'
miRNA:   3'- gCuGUAUUG----UAGGGGgACGugCaGGU- -5'
14247 5' -53.5 NC_003521.1 + 183134 0.66 0.98706
Target:  5'- gCGGCGgucGCAUCCCCgUGCAgacCCAg -3'
miRNA:   3'- -GCUGUau-UGUAGGGGgACGUgcaGGU- -5'
14247 5' -53.5 NC_003521.1 + 29204 0.66 0.986108
Target:  5'- aCGACGgcggugucagcgaaGACAUCCCgCUGCaggACGUCUc -3'
miRNA:   3'- -GCUGUa-------------UUGUAGGGgGACG---UGCAGGu -5'
14247 5' -53.5 NC_003521.1 + 221819 0.66 0.985444
Target:  5'- uCGGCGgggcgGGCguGUCUCCCUcgucgcgcgGCGCGUCCu -3'
miRNA:   3'- -GCUGUa----UUG--UAGGGGGA---------CGUGCAGGu -5'
14247 5' -53.5 NC_003521.1 + 166985 0.66 0.985444
Target:  5'- uGACGU--CGUUgCCCUcggccgucaGCGCGUCCAg -3'
miRNA:   3'- gCUGUAuuGUAGgGGGA---------CGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 178597 0.66 0.985444
Target:  5'- -aGCcgGGCGcCCUCCUGCagcacgGCGUCCAa -3'
miRNA:   3'- gcUGuaUUGUaGGGGGACG------UGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 68770 0.67 0.982545
Target:  5'- uGACGcagAACAUCCUcagcgcgcuagagauCCUGCGCG-CCGu -3'
miRNA:   3'- gCUGUa--UUGUAGGG---------------GGACGUGCaGGU- -5'
14247 5' -53.5 NC_003521.1 + 47687 0.67 0.981756
Target:  5'- cCGcCAUGAgCcUCCCCuCUGCACuUCCGa -3'
miRNA:   3'- -GCuGUAUU-GuAGGGG-GACGUGcAGGU- -5'
14247 5' -53.5 NC_003521.1 + 156184 0.67 0.981756
Target:  5'- aGACccacGACAU-CCCCUGCAUGgCCGa -3'
miRNA:   3'- gCUGua--UUGUAgGGGGACGUGCaGGU- -5'
14247 5' -53.5 NC_003521.1 + 191824 0.67 0.981756
Target:  5'- gGACucGGCGUCCCgCaGCACGUUCc -3'
miRNA:   3'- gCUGuaUUGUAGGGgGaCGUGCAGGu -5'
14247 5' -53.5 NC_003521.1 + 42298 0.67 0.979668
Target:  5'- aGACGguacGCAUCCCCCUGUuuuUGgccCCGc -3'
miRNA:   3'- gCUGUau--UGUAGGGGGACGu--GCa--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.