miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14247 5' -53.5 NC_003521.1 + 34173 1.09 0.008312
Target:  5'- gCGACAUAACAUCCCCCUGCACGUCCAu -3'
miRNA:   3'- -GCUGUAUUGUAGGGGGACGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 146214 0.72 0.843888
Target:  5'- gCGACc--ACAUCCCCCUGCucaucauCGUCa- -3'
miRNA:   3'- -GCUGuauUGUAGGGGGACGu------GCAGgu -5'
14247 5' -53.5 NC_003521.1 + 23209 0.72 0.843888
Target:  5'- gGAgAUGGCGgccgagaCgCCCCUGCugGUCCGg -3'
miRNA:   3'- gCUgUAUUGUa------G-GGGGACGugCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 34686 0.72 0.859414
Target:  5'- aGGCA----GUCCUCCUGCGCGUCg- -3'
miRNA:   3'- gCUGUauugUAGGGGGACGUGCAGgu -5'
14247 5' -53.5 NC_003521.1 + 121459 0.71 0.866881
Target:  5'- cCGGCG-GACAUCCCCg-GCGUGUCCAu -3'
miRNA:   3'- -GCUGUaUUGUAGGGGgaCGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 129636 0.71 0.874142
Target:  5'- cCGGCGggugcucAACGUCCCCgUGCACGUg-- -3'
miRNA:   3'- -GCUGUa------UUGUAGGGGgACGUGCAggu -5'
14247 5' -53.5 NC_003521.1 + 121329 0.71 0.881193
Target:  5'- cCGGCAUGGCGacaacggcUUCaCCCUGCACGcCCc -3'
miRNA:   3'- -GCUGUAUUGU--------AGG-GGGACGUGCaGGu -5'
14247 5' -53.5 NC_003521.1 + 134782 0.71 0.894644
Target:  5'- gCGACAUcGGCGUCuuCCCCUGCuucGCGcCCGa -3'
miRNA:   3'- -GCUGUA-UUGUAG--GGGGACG---UGCaGGU- -5'
14247 5' -53.5 NC_003521.1 + 136944 0.7 0.907204
Target:  5'- gCGGCAgccCAUCCCCCUGUcgGCGcugaucgCCAg -3'
miRNA:   3'- -GCUGUauuGUAGGGGGACG--UGCa------GGU- -5'
14247 5' -53.5 NC_003521.1 + 131001 0.7 0.913142
Target:  5'- aCGACGUGGcCAUCUCCgUGCcgcccuccuccACGUCCc -3'
miRNA:   3'- -GCUGUAUU-GUAGGGGgACG-----------UGCAGGu -5'
14247 5' -53.5 NC_003521.1 + 75300 0.7 0.918849
Target:  5'- cCGACGUGcACAU-CCCCUGCgacuGCGUCa- -3'
miRNA:   3'- -GCUGUAU-UGUAgGGGGACG----UGCAGgu -5'
14247 5' -53.5 NC_003521.1 + 66851 0.7 0.924325
Target:  5'- cCGAgaGUGACAUCCCCUggGCACGgugacuguggCCGa -3'
miRNA:   3'- -GCUg-UAUUGUAGGGGGa-CGUGCa---------GGU- -5'
14247 5' -53.5 NC_003521.1 + 218738 0.7 0.929568
Target:  5'- gCGGCGUcggGACgGUCCCCCaUGCuGCGUUCGc -3'
miRNA:   3'- -GCUGUA---UUG-UAGGGGG-ACG-UGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 178830 0.69 0.934579
Target:  5'- uCGACGagaaGAUGUCCCgCUGCGCuugGUCCAc -3'
miRNA:   3'- -GCUGUa---UUGUAGGGgGACGUG---CAGGU- -5'
14247 5' -53.5 NC_003521.1 + 91798 0.69 0.943906
Target:  5'- gCGGCGguugGGCAcccCCCCCUGCACcccCCAu -3'
miRNA:   3'- -GCUGUa---UUGUa--GGGGGACGUGca-GGU- -5'
14247 5' -53.5 NC_003521.1 + 196846 0.69 0.948225
Target:  5'- uGACccAGCGUCU--CUGCACGUCCAc -3'
miRNA:   3'- gCUGuaUUGUAGGggGACGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 77938 0.69 0.948225
Target:  5'- aGGCAgUAGCggCCCaCCUGCGCGcgCCc -3'
miRNA:   3'- gCUGU-AUUGuaGGG-GGACGUGCa-GGu -5'
14247 5' -53.5 NC_003521.1 + 117075 0.69 0.951919
Target:  5'- gGACAUccGGCcggccuucucgcuGUUCCCC-GCGCGUCCGg -3'
miRNA:   3'- gCUGUA--UUG-------------UAGGGGGaCGUGCAGGU- -5'
14247 5' -53.5 NC_003521.1 + 175568 0.69 0.952318
Target:  5'- -uACGUAGCAguUCCUCUUGCGCGcgcggaUCCAg -3'
miRNA:   3'- gcUGUAUUGU--AGGGGGACGUGC------AGGU- -5'
14247 5' -53.5 NC_003521.1 + 175461 0.69 0.952318
Target:  5'- gCGGCGcgcCGUCuCCCCggacaGCACGUCCu -3'
miRNA:   3'- -GCUGUauuGUAG-GGGGa----CGUGCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.