miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14249 3' -48.2 NC_003521.1 + 85469 0.66 0.999949
Target:  5'- aCGGugUUUCUCGcUgAGGCggaucugGUCGUGc -3'
miRNA:   3'- -GCUugGAAGAGC-AgUCCGaa-----UAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 38555 0.66 0.999949
Target:  5'- uGAACgUUCUCGUCgauuucugAGGacccGUCAUGg -3'
miRNA:   3'- gCUUGgAAGAGCAG--------UCCgaa-UAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 40373 0.67 0.999885
Target:  5'- aGGGCCUUCUCcacgauGUC-GGC--GUCGUGg -3'
miRNA:   3'- gCUUGGAAGAG------CAGuCCGaaUAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 103842 0.67 0.999852
Target:  5'- gGGGCCgcgUCUCGgccucgucCAGGCUggcgAUCAg- -3'
miRNA:   3'- gCUUGGa--AGAGCa-------GUCCGAa---UAGUac -5'
14249 3' -48.2 NC_003521.1 + 101813 0.67 0.999815
Target:  5'- uGGGCCUUCUCGUCuucgcagaagaagguGGCgggcuccggGUUGUGg -3'
miRNA:   3'- gCUUGGAAGAGCAGu--------------CCGaa-------UAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 98554 0.67 0.99981
Target:  5'- cCGAGCCaUCgUCGUCuccGGCggaccagcUGUCGUGg -3'
miRNA:   3'- -GCUUGGaAG-AGCAGu--CCGa-------AUAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 168466 0.68 0.999616
Target:  5'- gGGGCgCUgguggCUgGUCAGGUcgAUCAUGg -3'
miRNA:   3'- gCUUG-GAa----GAgCAGUCCGaaUAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 50427 0.68 0.999406
Target:  5'- gCGGACUcgcggUUCUCGUCguGGGCUgUAUCGa- -3'
miRNA:   3'- -GCUUGG-----AAGAGCAG--UCCGA-AUAGUac -5'
14249 3' -48.2 NC_003521.1 + 53320 0.69 0.998677
Target:  5'- gGAGCCgUCUCGUC-GGaucGUCGUGa -3'
miRNA:   3'- gCUUGGaAGAGCAGuCCgaaUAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 207546 0.74 0.961168
Target:  5'- uGAGCgUUUUCGUCAcGUUUGUCAUGc -3'
miRNA:   3'- gCUUGgAAGAGCAGUcCGAAUAGUAC- -5'
14249 3' -48.2 NC_003521.1 + 166015 0.75 0.930088
Target:  5'- gCGAGCCUgCUCGUCGGGgUUcagCAUGc -3'
miRNA:   3'- -GCUUGGAaGAGCAGUCCgAAua-GUAC- -5'
14249 3' -48.2 NC_003521.1 + 33236 1.1 0.02309
Target:  5'- aCGAACCUUCUCGUCAGGCUUAUCAUGu -3'
miRNA:   3'- -GCUUGGAAGAGCAGUCCGAAUAGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.