miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14249 5' -46.7 NC_003521.1 + 188098 0.66 0.999995
Target:  5'- gGCGUGACGAugGgacccGACGGAGgacacacugguggaGCgGCUg -3'
miRNA:   3'- gCGUACUGUUugCa----CUGCUUU--------------UG-CGA- -5'
14249 5' -46.7 NC_003521.1 + 21954 0.66 0.999994
Target:  5'- aGCAgugGGCGAGCGcGGCGGGAcuCGUUc -3'
miRNA:   3'- gCGUa--CUGUUUGCaCUGCUUUu-GCGA- -5'
14249 5' -46.7 NC_003521.1 + 162336 0.66 0.999994
Target:  5'- cCGCAggcGGCGAcuGCG-GGCGugGGCGCg -3'
miRNA:   3'- -GCGUa--CUGUU--UGCaCUGCuuUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 80306 0.66 0.999994
Target:  5'- uGCugGUGACGGugGUGcUGGAGcuGCGCg -3'
miRNA:   3'- gCG--UACUGUUugCACuGCUUU--UGCGa -5'
14249 5' -46.7 NC_003521.1 + 235581 0.66 0.999994
Target:  5'- cCGCggGACGuGCGggagGACGAGAG-GCg -3'
miRNA:   3'- -GCGuaCUGUuUGCa---CUGCUUUUgCGa -5'
14249 5' -46.7 NC_003521.1 + 192804 0.66 0.999994
Target:  5'- aGCAUaACcAACGUGACGGuGAACGg- -3'
miRNA:   3'- gCGUAcUGuUUGCACUGCU-UUUGCga -5'
14249 5' -46.7 NC_003521.1 + 110147 0.66 0.999994
Target:  5'- -cCGUGuccGCGAACGUGACGcuGAgGCg -3'
miRNA:   3'- gcGUAC---UGUUUGCACUGCuuUUgCGa -5'
14249 5' -46.7 NC_003521.1 + 193104 0.66 0.999994
Target:  5'- gGCGUcGACAAugcCGUcuGACGucAACGCUg -3'
miRNA:   3'- gCGUA-CUGUUu--GCA--CUGCuuUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 16715 0.67 0.999991
Target:  5'- gCGCGUGAU--GCGcGGCGAGuucggcgaccgccGGCGCg -3'
miRNA:   3'- -GCGUACUGuuUGCaCUGCUU-------------UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 234819 0.67 0.999991
Target:  5'- aGCgAUGACGaaGACGacGACGggGACGg- -3'
miRNA:   3'- gCG-UACUGU--UUGCa-CUGCuuUUGCga -5'
14249 5' -46.7 NC_003521.1 + 148457 0.67 0.999991
Target:  5'- gGCAgcgGGCGAGCG-GACGGgcaGGACGg- -3'
miRNA:   3'- gCGUa--CUGUUUGCaCUGCU---UUUGCga -5'
14249 5' -46.7 NC_003521.1 + 69403 0.67 0.999991
Target:  5'- aCGCA--GCAGACGcggGACGGugacGGCGCg -3'
miRNA:   3'- -GCGUacUGUUUGCa--CUGCUu---UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 84778 0.67 0.999991
Target:  5'- aGCGUGGcCAGGC-UGACGcugaaccuGACGCUg -3'
miRNA:   3'- gCGUACU-GUUUGcACUGCuu------UUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 43100 0.67 0.999991
Target:  5'- gCGCGcGACGAGC-UGACc-AAGCGCUg -3'
miRNA:   3'- -GCGUaCUGUUUGcACUGcuUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 80658 0.67 0.999991
Target:  5'- gCGCAUGAUGuccuCGaGAuCGAAGACGUUg -3'
miRNA:   3'- -GCGUACUGUuu--GCaCU-GCUUUUGCGA- -5'
14249 5' -46.7 NC_003521.1 + 102078 0.67 0.999991
Target:  5'- gGCGggGAaGGGCGUGAUGAu-GCGCa -3'
miRNA:   3'- gCGUa-CUgUUUGCACUGCUuuUGCGa -5'
14249 5' -46.7 NC_003521.1 + 124281 0.67 0.999988
Target:  5'- gCGCGgcUGACGAucuccagaaaGCGcGGCGAGguGACGCa -3'
miRNA:   3'- -GCGU--ACUGUU----------UGCaCUGCUU--UUGCGa -5'
14249 5' -46.7 NC_003521.1 + 129682 0.67 0.999988
Target:  5'- aCGCAggaGCugucGACG-GGCGAGGACGCc -3'
miRNA:   3'- -GCGUac-UGu---UUGCaCUGCUUUUGCGa -5'
14249 5' -46.7 NC_003521.1 + 48636 0.67 0.999988
Target:  5'- aGCAgcGCGAgcaGCGUGAUGAAAAC-CUa -3'
miRNA:   3'- gCGUacUGUU---UGCACUGCUUUUGcGA- -5'
14249 5' -46.7 NC_003521.1 + 163187 0.67 0.999988
Target:  5'- gGCAgcgGACAcgGugGUGGCGGcgGCaGCg -3'
miRNA:   3'- gCGUa--CUGU--UugCACUGCUuuUG-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.