miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 198269 0.68 0.893958
Target:  5'- gCCGGACAgccagC-CGGGCguCGCGGaGGAc -3'
miRNA:   3'- -GGCCUGUa----GaGCCCGauGCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 224408 0.68 0.887508
Target:  5'- gCCGGuACAcCUCgccggccaGGcGCUGCGUGGUGGGc -3'
miRNA:   3'- -GGCC-UGUaGAG--------CC-CGAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 136874 0.68 0.887508
Target:  5'- cCCGacaagcGCAUCUCGGGCU-CGCAGa--- -3'
miRNA:   3'- -GGCc-----UGUAGAGCCCGAuGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 150328 0.67 0.946587
Target:  5'- aCCuGACAguUUUCGGGCUAUaCAGagGGAa -3'
miRNA:   3'- -GGcCUGU--AGAGCCCGAUGcGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 228266 0.67 0.928158
Target:  5'- cCCGGGCAUCUCcagacGCUcgGCGUccuccacggcgaAGUGGAa -3'
miRNA:   3'- -GGCCUGUAGAGcc---CGA--UGCG------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 112375 0.67 0.927652
Target:  5'- gCUGcGGCGUCUCGuccaccuGGCUgGCGCAGUGc- -3'
miRNA:   3'- -GGC-CUGUAGAGC-------CCGA-UGCGUCACcu -5'
14252 3' -56.4 NC_003521.1 + 208572 0.67 0.946587
Target:  5'- gUauGACAUC-CGGGCcugACGCucgAGUGGGa -3'
miRNA:   3'- -GgcCUGUAGaGCCCGa--UGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 117413 0.67 0.928157
Target:  5'- aCCGGguggagggcgGCAUCUCGGGUccGCGCGGc--- -3'
miRNA:   3'- -GGCC----------UGUAGAGCCCGa-UGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 60127 0.67 0.933093
Target:  5'- aUGGGCAUCUugUGGGUUcGCGUuuugguaaccuGGUGGAu -3'
miRNA:   3'- gGCCUGUAGA--GCCCGA-UGCG-----------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 197944 0.67 0.937809
Target:  5'- aCGGGCGcgcgCUUGaGCUGCGCgaugcccuGGUGGAa -3'
miRNA:   3'- gGCCUGUa---GAGCcCGAUGCG--------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 78656 0.67 0.928158
Target:  5'- --cGAUGUCgUCGGGCUucucgGCGCAGgGGAa -3'
miRNA:   3'- ggcCUGUAG-AGCCCGA-----UGCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 175301 0.67 0.928158
Target:  5'- aCGGGgGUCUCGGGCcuaaGCAcGUGa- -3'
miRNA:   3'- gGCCUgUAGAGCCCGaug-CGU-CACcu -5'
14252 3' -56.4 NC_003521.1 + 39566 0.67 0.946587
Target:  5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3'
miRNA:   3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5'
14252 3' -56.4 NC_003521.1 + 193292 0.67 0.946587
Target:  5'- aCGGGCGUCggagUCGGcGCggGgGUGGUGGGc -3'
miRNA:   3'- gGCCUGUAG----AGCC-CGa-UgCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 123169 0.67 0.942306
Target:  5'- gCCGGcgcacCGUCUCGcGGCgcaguCGCAGgcGGAa -3'
miRNA:   3'- -GGCCu----GUAGAGC-CCGau---GCGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 135752 0.67 0.946587
Target:  5'- cCCGGACGUUccCGGGaccgaAgGCGGUGGc -3'
miRNA:   3'- -GGCCUGUAGa-GCCCga---UgCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 239793 0.67 0.946587
Target:  5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3'
miRNA:   3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5'
14252 3' -56.4 NC_003521.1 + 109449 0.67 0.937809
Target:  5'- gUGGGCAcggUCUCGGGUauggGCGCGucugGGAa -3'
miRNA:   3'- gGCCUGU---AGAGCCCGa---UGCGUca--CCU- -5'
14252 3' -56.4 NC_003521.1 + 131102 0.67 0.933093
Target:  5'- uCCGGACggCg-GGGCgGCGCGGcugccgGGAa -3'
miRNA:   3'- -GGCCUGuaGagCCCGaUGCGUCa-----CCU- -5'
14252 3' -56.4 NC_003521.1 + 197387 0.67 0.941866
Target:  5'- uCCaGGGCcgCcgccgccuccucgUCGGGC-ACGCAGUaGGAa -3'
miRNA:   3'- -GG-CCUGuaG-------------AGCCCGaUGCGUCA-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.