Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14252 | 3' | -56.4 | NC_003521.1 | + | 200325 | 0.66 | 0.953753 |
Target: 5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3' miRNA: 3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 240646 | 0.66 | 0.953753 |
Target: 5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3' miRNA: 3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 97 | 0.66 | 0.953753 |
Target: 5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3' miRNA: 3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 154763 | 0.66 | 0.954507 |
Target: 5'- aUCGGcuACuUCUCGGGCaACGgC-GUGGAg -3' miRNA: 3'- -GGCC--UGuAGAGCCCGaUGC-GuCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 7756 | 0.66 | 0.954507 |
Target: 5'- gCCGGACugcugAUCaUUGuGGCUuCGCuAGUGGGa -3' miRNA: 3'- -GGCCUG-----UAG-AGC-CCGAuGCG-UCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 193463 | 0.66 | 0.961592 |
Target: 5'- uCCGGcuuCGUCUCGGGUUuuGUguUGGGg -3' miRNA: 3'- -GGCCu--GUAGAGCCCGAugCGucACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 166636 | 0.66 | 0.961592 |
Target: 5'- gUCGGGCcgCgcgcCGGGCgccgcgGCGCAGcGGc -3' miRNA: 3'- -GGCCUGuaGa---GCCCGa-----UGCGUCaCCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 32115 | 0.66 | 0.964831 |
Target: 5'- gCGcGGCugAUCUCGGGCagguagcggGCGCGGUGc- -3' miRNA: 3'- gGC-CUG--UAGAGCCCGa--------UGCGUCACcu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 98441 | 0.66 | 0.964831 |
Target: 5'- gCCGcGGCcUCcUGGGCUACGU--UGGAg -3' miRNA: 3'- -GGC-CUGuAGaGCCCGAUGCGucACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 180466 | 0.66 | 0.964831 |
Target: 5'- uUGGucuCGUCcacgaauagCGGGCUGCGCAGguUGGc -3' miRNA: 3'- gGCCu--GUAGa--------GCCCGAUGCGUC--ACCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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