miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 162714 0.83 0.207512
Target:  5'- -aGGuguACAUCUCGGGCUGCGUGGUGGu -3'
miRNA:   3'- ggCC---UGUAGAGCCCGAUGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 160317 0.72 0.741261
Target:  5'- aCGGcCAUCggagccgUGGGCgGCGCGGUGGc -3'
miRNA:   3'- gGCCuGUAGa------GCCCGaUGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 154763 0.66 0.954507
Target:  5'- aUCGGcuACuUCUCGGGCaACGgC-GUGGAg -3'
miRNA:   3'- -GGCC--UGuAGAGCCCGaUGC-GuCACCU- -5'
14252 3' -56.4 NC_003521.1 + 153136 0.68 0.896479
Target:  5'- aCGGGCcUCUCGGGCgccuccACGCucagcaaccacaucGUGGGc -3'
miRNA:   3'- gGCCUGuAGAGCCCGa-----UGCGu-------------CACCU- -5'
14252 3' -56.4 NC_003521.1 + 150328 0.67 0.946587
Target:  5'- aCCuGACAguUUUCGGGCUAUaCAGagGGAa -3'
miRNA:   3'- -GGcCUGU--AGAGCCCGAUGcGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 136874 0.68 0.887508
Target:  5'- cCCGacaagcGCAUCUCGGGCU-CGCAGa--- -3'
miRNA:   3'- -GGCc-----UGUAGAGCCCGAuGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 135752 0.67 0.946587
Target:  5'- cCCGGACGUUccCGGGaccgaAgGCGGUGGc -3'
miRNA:   3'- -GGCCUGUAGa-GCCCga---UgCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 131102 0.67 0.933093
Target:  5'- uCCGGACggCg-GGGCgGCGCGGcugccgGGAa -3'
miRNA:   3'- -GGCCUGuaGagCCCGaUGCGUCa-----CCU- -5'
14252 3' -56.4 NC_003521.1 + 131044 0.7 0.836806
Target:  5'- cCUGGGCGgcggCggCGGGCcucuggACGCGGUGGc -3'
miRNA:   3'- -GGCCUGUa---Ga-GCCCGa-----UGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 127862 0.7 0.803953
Target:  5'- gCGGcauguaguagcGCAUCUCGGGCggguCGCGGUaGGc -3'
miRNA:   3'- gGCC-----------UGUAGAGCCCGau--GCGUCA-CCu -5'
14252 3' -56.4 NC_003521.1 + 125822 0.69 0.88085
Target:  5'- gCCGuaaACGUCugcgcgUCGGGCU-CGCGGUGGu -3'
miRNA:   3'- -GGCc--UGUAG------AGCCCGAuGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 123169 0.67 0.942306
Target:  5'- gCCGGcgcacCGUCUCGcGGCgcaguCGCAGgcGGAa -3'
miRNA:   3'- -GGCCu----GUAGAGC-CCGau---GCGUCa-CCU- -5'
14252 3' -56.4 NC_003521.1 + 122689 0.69 0.859677
Target:  5'- gCCGGugAUCaUGGGCgucucgGCGgGGcUGGAg -3'
miRNA:   3'- -GGCCugUAGaGCCCGa-----UGCgUC-ACCU- -5'
14252 3' -56.4 NC_003521.1 + 120760 0.69 0.852235
Target:  5'- aCGGACcugaacGUCaaGGGgcaCUGCGCGGUGGGc -3'
miRNA:   3'- gGCCUG------UAGagCCC---GAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 117413 0.67 0.928157
Target:  5'- aCCGGguggagggcgGCAUCUCGGGUccGCGCGGc--- -3'
miRNA:   3'- -GGCC----------UGUAGAGCCCGa-UGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 112375 0.67 0.927652
Target:  5'- gCUGcGGCGUCUCGuccaccuGGCUgGCGCAGUGc- -3'
miRNA:   3'- -GGC-CUGUAGAGC-------CCGA-UGCGUCACcu -5'
14252 3' -56.4 NC_003521.1 + 109449 0.67 0.937809
Target:  5'- gUGGGCAcggUCUCGGGUauggGCGCGucugGGAa -3'
miRNA:   3'- gGCCUGU---AGAGCCCGa---UGCGUca--CCU- -5'
14252 3' -56.4 NC_003521.1 + 105628 0.69 0.876758
Target:  5'- -aGGGCGUgCUCGGGCgugUGCGUgaagcccagcucgggGGUGGGc -3'
miRNA:   3'- ggCCUGUA-GAGCCCG---AUGCG---------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 100245 0.71 0.786639
Target:  5'- gCCGGccGCGaaaucCUCGGGCgGCGCcugGGUGGAg -3'
miRNA:   3'- -GGCC--UGUa----GAGCCCGaUGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 98441 0.66 0.964831
Target:  5'- gCCGcGGCcUCcUGGGCUACGU--UGGAg -3'
miRNA:   3'- -GGC-CUGuAGaGCCCGAUGCGucACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.