miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 160317 0.72 0.741261
Target:  5'- aCGGcCAUCggagccgUGGGCgGCGCGGUGGc -3'
miRNA:   3'- gGCCuGUAGa------GCCCGaUGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 100245 0.71 0.786639
Target:  5'- gCCGGccGCGaaaucCUCGGGCgGCGCcugGGUGGAg -3'
miRNA:   3'- -GGCC--UGUa----GAGCCCGaUGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 127862 0.7 0.803953
Target:  5'- gCGGcauguaguagcGCAUCUCGGGCggguCGCGGUaGGc -3'
miRNA:   3'- gGCC-----------UGUAGAGCCCGau--GCGUCA-CCu -5'
14252 3' -56.4 NC_003521.1 + 167166 0.7 0.836806
Target:  5'- cUCGGGCGUCUUGgaGGCggcCGCGGcGGAg -3'
miRNA:   3'- -GGCCUGUAGAGC--CCGau-GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 213309 0.7 0.844609
Target:  5'- gUGGGCGcCUCGGGCcgcACGCcccccGUGGAg -3'
miRNA:   3'- gGCCUGUaGAGCCCGa--UGCGu----CACCU- -5'
14252 3' -56.4 NC_003521.1 + 120760 0.69 0.852235
Target:  5'- aCGGACcugaacGUCaaGGGgcaCUGCGCGGUGGGc -3'
miRNA:   3'- gGCCUG------UAGagCCC---GAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 122689 0.69 0.859677
Target:  5'- gCCGGugAUCaUGGGCgucucgGCGgGGcUGGAg -3'
miRNA:   3'- -GGCCugUAGaGCCCGa-----UGCgUC-ACCU- -5'
14252 3' -56.4 NC_003521.1 + 163651 0.69 0.864052
Target:  5'- cUCGGugcGCGUCUCGGuGCUGCGgagcugcucaacaAGUGGGu -3'
miRNA:   3'- -GGCC---UGUAGAGCC-CGAUGCg------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 5547 0.69 0.876758
Target:  5'- gCGGcGCGUCguuccucccgguugCGGGCUcgGCGGUGGAa -3'
miRNA:   3'- gGCC-UGUAGa-------------GCCCGAugCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 29067 1.11 0.003821
Target:  5'- gCCGGACAUCUCGGGCUACGCAGUGGAg -3'
miRNA:   3'- -GGCCUGUAGAGCCCGAUGCGUCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.