Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14252 | 3' | -56.4 | NC_003521.1 | + | 150328 | 0.67 | 0.946587 |
Target: 5'- aCCuGACAguUUUCGGGCUAUaCAGagGGAa -3' miRNA: 3'- -GGcCUGU--AGAGCCCGAUGcGUCa-CCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 198269 | 0.68 | 0.893958 |
Target: 5'- gCCGGACAgccagC-CGGGCguCGCGGaGGAc -3' miRNA: 3'- -GGCCUGUa----GaGCCCGauGCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 97 | 0.66 | 0.953753 |
Target: 5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3' miRNA: 3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 166636 | 0.66 | 0.961592 |
Target: 5'- gUCGGGCcgCgcgcCGGGCgccgcgGCGCAGcGGc -3' miRNA: 3'- -GGCCUGuaGa---GCCCGa-----UGCGUCaCCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 39566 | 0.67 | 0.946587 |
Target: 5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3' miRNA: 3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 154763 | 0.66 | 0.954507 |
Target: 5'- aUCGGcuACuUCUCGGGCaACGgC-GUGGAg -3' miRNA: 3'- -GGCC--UGuAGAGCCCGaUGC-GuCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 240646 | 0.66 | 0.953753 |
Target: 5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3' miRNA: 3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 7756 | 0.66 | 0.954507 |
Target: 5'- gCCGGACugcugAUCaUUGuGGCUuCGCuAGUGGGa -3' miRNA: 3'- -GGCCUG-----UAG-AGC-CCGAuGCG-UCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 200325 | 0.66 | 0.953753 |
Target: 5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3' miRNA: 3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 131044 | 0.7 | 0.836806 |
Target: 5'- cCUGGGCGgcggCggCGGGCcucuggACGCGGUGGc -3' miRNA: 3'- -GGCCUGUa---Ga-GCCCGa-----UGCGUCACCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 222106 | 0.69 | 0.86693 |
Target: 5'- gCCGGcaGCGUCUCGaGGCgcUGCGCcG-GGAa -3' miRNA: 3'- -GGCC--UGUAGAGC-CCG--AUGCGuCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 105628 | 0.69 | 0.876758 |
Target: 5'- -aGGGCGUgCUCGGGCgugUGCGUgaagcccagcucgggGGUGGGc -3' miRNA: 3'- ggCCUGUA-GAGCCCG---AUGCG---------------UCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 193463 | 0.66 | 0.961592 |
Target: 5'- uCCGGcuuCGUCUCGGGUUuuGUguUGGGg -3' miRNA: 3'- -GGCCu--GUAGAGCCCGAugCGucACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 125822 | 0.69 | 0.88085 |
Target: 5'- gCCGuaaACGUCugcgcgUCGGGCU-CGCGGUGGu -3' miRNA: 3'- -GGCc--UGUAG------AGCCCGAuGCGUCACCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 32115 | 0.66 | 0.964831 |
Target: 5'- gCGcGGCugAUCUCGGGCagguagcggGCGCGGUGc- -3' miRNA: 3'- gGC-CUG--UAGAGCCCGa--------UGCGUCACcu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 112375 | 0.67 | 0.927652 |
Target: 5'- gCUGcGGCGUCUCGuccaccuGGCUgGCGCAGUGc- -3' miRNA: 3'- -GGC-CUGUAGAGC-------CCGA-UGCGUCACcu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 109449 | 0.67 | 0.937809 |
Target: 5'- gUGGGCAcggUCUCGGGUauggGCGCGucugGGAa -3' miRNA: 3'- gGCCUGU---AGAGCCCGa---UGCGUca--CCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 78656 | 0.67 | 0.928158 |
Target: 5'- --cGAUGUCgUCGGGCUucucgGCGCAGgGGAa -3' miRNA: 3'- ggcCUGUAG-AGCCCGA-----UGCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 175301 | 0.67 | 0.928158 |
Target: 5'- aCGGGgGUCUCGGGCcuaaGCAcGUGa- -3' miRNA: 3'- gGCCUgUAGAGCCCGaug-CGU-CACcu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 131102 | 0.67 | 0.933093 |
Target: 5'- uCCGGACggCg-GGGCgGCGCGGcugccgGGAa -3' miRNA: 3'- -GGCCUGuaGagCCCGaUGCGUCa-----CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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