miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 131102 0.67 0.933093
Target:  5'- uCCGGACggCg-GGGCgGCGCGGcugccgGGAa -3'
miRNA:   3'- -GGCCUGuaGagCCCGaUGCGUCa-----CCU- -5'
14252 3' -56.4 NC_003521.1 + 60127 0.67 0.933093
Target:  5'- aUGGGCAUCUugUGGGUUcGCGUuuugguaaccuGGUGGAu -3'
miRNA:   3'- gGCCUGUAGA--GCCCGA-UGCG-----------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 228266 0.67 0.928158
Target:  5'- cCCGGGCAUCUCcagacGCUcgGCGUccuccacggcgaAGUGGAa -3'
miRNA:   3'- -GGCCUGUAGAGcc---CGA--UGCG------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 175301 0.67 0.928158
Target:  5'- aCGGGgGUCUCGGGCcuaaGCAcGUGa- -3'
miRNA:   3'- gGCCUgUAGAGCCCGaug-CGU-CACcu -5'
14252 3' -56.4 NC_003521.1 + 78656 0.67 0.928158
Target:  5'- --cGAUGUCgUCGGGCUucucgGCGCAGgGGAa -3'
miRNA:   3'- ggcCUGUAG-AGCCCGA-----UGCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 117413 0.67 0.928157
Target:  5'- aCCGGguggagggcgGCAUCUCGGGUccGCGCGGc--- -3'
miRNA:   3'- -GGCC----------UGUAGAGCCCGa-UGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 112375 0.67 0.927652
Target:  5'- gCUGcGGCGUCUCGuccaccuGGCUgGCGCAGUGc- -3'
miRNA:   3'- -GGC-CUGUAGAGC-------CCGA-UGCGUCACcu -5'
14252 3' -56.4 NC_003521.1 + 153136 0.68 0.896479
Target:  5'- aCGGGCcUCUCGGGCgccuccACGCucagcaaccacaucGUGGGc -3'
miRNA:   3'- gGCCUGuAGAGCCCGa-----UGCGu-------------CACCU- -5'
14252 3' -56.4 NC_003521.1 + 198269 0.68 0.893958
Target:  5'- gCCGGACAgccagC-CGGGCguCGCGGaGGAc -3'
miRNA:   3'- -GGCCUGUa----GaGCCCGauGCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 224408 0.68 0.887508
Target:  5'- gCCGGuACAcCUCgccggccaGGcGCUGCGUGGUGGGc -3'
miRNA:   3'- -GGCC-UGUaGAG--------CC-CGAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 136874 0.68 0.887508
Target:  5'- cCCGacaagcGCAUCUCGGGCU-CGCAGa--- -3'
miRNA:   3'- -GGCc-----UGUAGAGCCCGAuGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 125822 0.69 0.88085
Target:  5'- gCCGuaaACGUCugcgcgUCGGGCU-CGCGGUGGu -3'
miRNA:   3'- -GGCc--UGUAG------AGCCCGAuGCGUCACCu -5'
14252 3' -56.4 NC_003521.1 + 5547 0.69 0.876758
Target:  5'- gCGGcGCGUCguuccucccgguugCGGGCUcgGCGGUGGAa -3'
miRNA:   3'- gGCC-UGUAGa-------------GCCCGAugCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 105628 0.69 0.876758
Target:  5'- -aGGGCGUgCUCGGGCgugUGCGUgaagcccagcucgggGGUGGGc -3'
miRNA:   3'- ggCCUGUA-GAGCCCG---AUGCG---------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 222106 0.69 0.86693
Target:  5'- gCCGGcaGCGUCUCGaGGCgcUGCGCcG-GGAa -3'
miRNA:   3'- -GGCC--UGUAGAGC-CCG--AUGCGuCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 163651 0.69 0.864052
Target:  5'- cUCGGugcGCGUCUCGGuGCUGCGgagcugcucaacaAGUGGGu -3'
miRNA:   3'- -GGCC---UGUAGAGCC-CGAUGCg------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 192667 0.69 0.859677
Target:  5'- uUGGGCGUCUUGGGCU-CGCcgauGUacacGGAg -3'
miRNA:   3'- gGCCUGUAGAGCCCGAuGCGu---CA----CCU- -5'
14252 3' -56.4 NC_003521.1 + 122689 0.69 0.859677
Target:  5'- gCCGGugAUCaUGGGCgucucgGCGgGGcUGGAg -3'
miRNA:   3'- -GGCCugUAGaGCCCGa-----UGCgUC-ACCU- -5'
14252 3' -56.4 NC_003521.1 + 120760 0.69 0.852235
Target:  5'- aCGGACcugaacGUCaaGGGgcaCUGCGCGGUGGGc -3'
miRNA:   3'- gGCCUG------UAGagCCC---GAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 213309 0.7 0.844609
Target:  5'- gUGGGCGcCUCGGGCcgcACGCcccccGUGGAg -3'
miRNA:   3'- gGCCUGUaGAGCCCGa--UGCGu----CACCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.