miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 139415 0.66 0.907161
Target:  5'- -uUCCAGccgcacgggcucuccUGCGUGG-CCGUCaaGCGGCGc -3'
miRNA:   3'- gcAGGUC---------------ACGCACUaGGCGG--UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 140473 0.69 0.751175
Target:  5'- cCGUCC---GCGUGGcUUCGCCGCGGUu -3'
miRNA:   3'- -GCAGGucaCGCACU-AGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 142324 0.71 0.656896
Target:  5'- uCGUCgCaacugGGUGCGcGAggccgCCGCCACGGCc -3'
miRNA:   3'- -GCAG-G-----UCACGCaCUa----GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 145384 0.67 0.879668
Target:  5'- aG-CCGGUGCGcGA-CgGCCugGGCc -3'
miRNA:   3'- gCaGGUCACGCaCUaGgCGGugCCGc -5'
14252 5' -58.8 NC_003521.1 + 148402 0.67 0.879668
Target:  5'- gGUCCAcGUGCGaGGga-GCCAUGGUGc -3'
miRNA:   3'- gCAGGU-CACGCaCUaggCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 149171 0.66 0.886261
Target:  5'- uCGUCCGucucgGCGcGcgUCGCCAcCGGCGg -3'
miRNA:   3'- -GCAGGUca---CGCaCuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 163226 0.79 0.250031
Target:  5'- gCGcCCGGUGaCGUGGguUCgGCCACGGCGg -3'
miRNA:   3'- -GCaGGUCAC-GCACU--AGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 163295 0.68 0.835368
Target:  5'- aCGUCCAGUugcgacgGCGUG-UCCacgGUCAgCGGCGc -3'
miRNA:   3'- -GCAGGUCA-------CGCACuAGG---CGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 166231 0.69 0.786707
Target:  5'- gGUagaAGaGCGUGAUgCCGCC-CGGCGa -3'
miRNA:   3'- gCAgg-UCaCGCACUA-GGCGGuGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 169158 0.67 0.858728
Target:  5'- --aCCaAGUGCGUGGUgCGCCGCuccaacucGGCc -3'
miRNA:   3'- gcaGG-UCACGCACUAgGCGGUG--------CCGc -5'
14252 5' -58.8 NC_003521.1 + 170058 0.76 0.39314
Target:  5'- -uUCCAcGUGCagcugGUGAUCgGCCGCGGCGc -3'
miRNA:   3'- gcAGGU-CACG-----CACUAGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172103 0.66 0.904826
Target:  5'- aGUCC-GUGCG-GG-CgGCCgACGGCGc -3'
miRNA:   3'- gCAGGuCACGCaCUaGgCGG-UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172304 0.72 0.579793
Target:  5'- cCGUCCGGUGUcgGUGGcgccaggCCgGUCGCGGCGg -3'
miRNA:   3'- -GCAGGUCACG--CACUa------GG-CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 177705 0.67 0.879668
Target:  5'- uGUUCAG-GUcgGUGAUCCGCC-CGGg- -3'
miRNA:   3'- gCAGGUCaCG--CACUAGGCGGuGCCgc -5'
14252 5' -58.8 NC_003521.1 + 179117 0.69 0.786707
Target:  5'- gCGUa-GGUGCaUGAccUCCGCCGCGGUu -3'
miRNA:   3'- -GCAggUCACGcACU--AGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 180097 0.66 0.890757
Target:  5'- cCGUCCAGggagggcagcgGCGUGGUgcgacccgcgCCGCCcccgggucccccgcGCGGCc -3'
miRNA:   3'- -GCAGGUCa----------CGCACUA----------GGCGG--------------UGCCGc -5'
14252 5' -58.8 NC_003521.1 + 196658 0.66 0.892654
Target:  5'- aCGUCCagcugGGUGCGcaGGUCCaccaggauGUCGCGGCu -3'
miRNA:   3'- -GCAGG-----UCACGCa-CUAGG--------CGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 207600 0.72 0.608622
Target:  5'- aCG-CCGGcUGCaaGAUCCGUCugGGCGg -3'
miRNA:   3'- -GCaGGUC-ACGcaCUAGGCGGugCCGC- -5'
14252 5' -58.8 NC_003521.1 + 221951 0.68 0.820258
Target:  5'- aCGUCCAG-GCGg---UCGCCguACGGCa -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGG--UGCCGc -5'
14252 5' -58.8 NC_003521.1 + 223737 0.71 0.665562
Target:  5'- gGUCCGGUGgcgggaaCGUGGgucgCCGCCAgCGGUa -3'
miRNA:   3'- gCAGGUCAC-------GCACUa---GGCGGU-GCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.