Results 41 - 60 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 92496 | 0.72 | 0.608622 |
Target: 5'- -cUCCGG-GCGUGGUCCGCCACc--- -3' miRNA: 3'- gcAGGUCaCGCACUAGGCGGUGccgc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 88441 | 0.67 | 0.858728 |
Target: 5'- -cUCCAGggaGaCGUcGUCCGCCuCGGCGu -3' miRNA: 3'- gcAGGUCa--C-GCAcUAGGCGGuGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 76554 | 0.66 | 0.898843 |
Target: 5'- uGUCCAGgaGCGgcGGUCCGCgCcucCGGCa -3' miRNA: 3'- gCAGGUCa-CGCa-CUAGGCG-Gu--GCCGc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 70744 | 0.66 | 0.892654 |
Target: 5'- uCGUCCAGcUGCag---CgCGCCGCGGCc -3' miRNA: 3'- -GCAGGUC-ACGcacuaG-GCGGUGCCGc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 68014 | 0.75 | 0.442728 |
Target: 5'- --cCCAGcUGCGUGAgccucaCCGCCACgGGCGg -3' miRNA: 3'- gcaGGUC-ACGCACUa-----GGCGGUG-CCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 64829 | 0.67 | 0.851376 |
Target: 5'- cCGUCCGGgGCuaacagggGAUCU-CCACGGCGa -3' miRNA: 3'- -GCAGGUCaCGca------CUAGGcGGUGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 58384 | 0.66 | 0.886261 |
Target: 5'- --cCCcGUGCacaggggGAUCUGCCGCGGCc -3' miRNA: 3'- gcaGGuCACGca-----CUAGGCGGUGCCGc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 56778 | 0.66 | 0.892654 |
Target: 5'- cCGUCCAgcugcuGUGCGcGAgggCuCGCgACGGCa -3' miRNA: 3'- -GCAGGU------CACGCaCUa--G-GCGgUGCCGc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 53505 | 0.67 | 0.851376 |
Target: 5'- aG-CCGGUGCGcUGuuGUCCGaCGCGGCc -3' miRNA: 3'- gCaGGUCACGC-AC--UAGGCgGUGCCGc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 52787 | 0.66 | 0.910033 |
Target: 5'- uGUCCAGgcgGCGgugcggcuccaccUGGaCCGCCuucACGGUGa -3' miRNA: 3'- gCAGGUCa--CGC-------------ACUaGGCGG---UGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 47625 | 0.73 | 0.56073 |
Target: 5'- uCGUCCAG-GCGg---CCGUgACGGCGg -3' miRNA: 3'- -GCAGGUCaCGCacuaGGCGgUGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 43345 | 0.71 | 0.676129 |
Target: 5'- cCGUCCGGcccgccgcGCGUGAacaUCCGCCAgagcaugcgcUGGCGc -3' miRNA: 3'- -GCAGGUCa-------CGCACU---AGGCGGU----------GCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 29102 | 1.09 | 0.002899 |
Target: 5'- gCGUCCAGUGCGUGAUCCGCCACGGCGg -3' miRNA: 3'- -GCAGGUCACGCACUAGGCGGUGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 27969 | 0.66 | 0.910601 |
Target: 5'- aCG-CCAGgcgGCGcucaCgGCCACGGCGg -3' miRNA: 3'- -GCaGGUCa--CGCacuaGgCGGUGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 23236 | 0.7 | 0.727248 |
Target: 5'- gGUCCGGgGCGgacccgggguccugaUGAucUCCGCCaugACGGCGa -3' miRNA: 3'- gCAGGUCaCGC---------------ACU--AGGCGG---UGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 17483 | 0.67 | 0.858728 |
Target: 5'- aCGgcaCCGGUaGCG-GcgCCGCCggucACGGCGg -3' miRNA: 3'- -GCa--GGUCA-CGCaCuaGGCGG----UGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 17353 | 0.66 | 0.898843 |
Target: 5'- --cCCGG-GcCGUGAcgCCGgCGCGGCGg -3' miRNA: 3'- gcaGGUCaC-GCACUa-GGCgGUGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 16866 | 0.66 | 0.898844 |
Target: 5'- aCGUCUAcgacGUGCGU--UCC-CCGCGGCc -3' miRNA: 3'- -GCAGGU----CACGCAcuAGGcGGUGCCGc -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 7969 | 0.67 | 0.858728 |
Target: 5'- uGUCgCGGc-CGggagGGUCCGCgGCGGCGg -3' miRNA: 3'- gCAG-GUCacGCa---CUAGGCGgUGCCGC- -5' |
|||||||
14252 | 5' | -58.8 | NC_003521.1 | + | 6083 | 0.79 | 0.267513 |
Target: 5'- aCGgCCGGUGCGgcgGcguUCCGCCACGGCu -3' miRNA: 3'- -GCaGGUCACGCa--Cu--AGGCGGUGCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home