miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 196658 0.66 0.892654
Target:  5'- aCGUCCagcugGGUGCGcaGGUCCaccaggauGUCGCGGCu -3'
miRNA:   3'- -GCAGG-----UCACGCa-CUAGG--------CGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 56778 0.66 0.892654
Target:  5'- cCGUCCAgcugcuGUGCGcGAgggCuCGCgACGGCa -3'
miRNA:   3'- -GCAGGU------CACGCaCUa--G-GCGgUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 76554 0.66 0.898843
Target:  5'- uGUCCAGgaGCGgcGGUCCGCgCcucCGGCa -3'
miRNA:   3'- gCAGGUCa-CGCa-CUAGGCG-Gu--GCCGc -5'
14252 5' -58.8 NC_003521.1 + 17353 0.66 0.898843
Target:  5'- --cCCGG-GcCGUGAcgCCGgCGCGGCGg -3'
miRNA:   3'- gcaGGUCaC-GCACUa-GGCgGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172103 0.66 0.904826
Target:  5'- aGUCC-GUGCG-GG-CgGCCgACGGCGc -3'
miRNA:   3'- gCAGGuCACGCaCUaGgCGG-UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 112798 0.66 0.904826
Target:  5'- gCGUgCGGcGCGaGGUgCCGCgCACGGUGa -3'
miRNA:   3'- -GCAgGUCaCGCaCUA-GGCG-GUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 139415 0.66 0.907161
Target:  5'- -uUCCAGccgcacgggcucuccUGCGUGG-CCGUCaaGCGGCGc -3'
miRNA:   3'- gcAGGUC---------------ACGCACUaGGCGG--UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 53505 0.67 0.851376
Target:  5'- aG-CCGGUGCGcUGuuGUCCGaCGCGGCc -3'
miRNA:   3'- gCaGGUCACGC-AC--UAGGCgGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 163295 0.68 0.835368
Target:  5'- aCGUCCAGUugcgacgGCGUG-UCCacgGUCAgCGGCGc -3'
miRNA:   3'- -GCAGGUCA-------CGCACuAGG---CGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 221951 0.68 0.820258
Target:  5'- aCGUCCAG-GCGg---UCGCCguACGGCa -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGG--UGCCGc -5'
14252 5' -58.8 NC_003521.1 + 163226 0.79 0.250031
Target:  5'- gCGcCCGGUGaCGUGGguUCgGCCACGGCGg -3'
miRNA:   3'- -GCaGGUCAC-GCACU--AGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 170058 0.76 0.39314
Target:  5'- -uUCCAcGUGCagcugGUGAUCgGCCGCGGCGc -3'
miRNA:   3'- gcAGGU-CACG-----CACUAGgCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 112364 0.76 0.409268
Target:  5'- uGcCCAugGaCGUGAUCCGCCugGGCGa -3'
miRNA:   3'- gCaGGUcaC-GCACUAGGCGGugCCGC- -5'
14252 5' -58.8 NC_003521.1 + 68014 0.75 0.442728
Target:  5'- --cCCAGcUGCGUGAgccucaCCGCCACgGGCGg -3'
miRNA:   3'- gcaGGUC-ACGCACUa-----GGCGGUG-CCGC- -5'
14252 5' -58.8 NC_003521.1 + 47625 0.73 0.56073
Target:  5'- uCGUCCAG-GCGg---CCGUgACGGCGg -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172304 0.72 0.579793
Target:  5'- cCGUCCGGUGUcgGUGGcgccaggCCgGUCGCGGCGg -3'
miRNA:   3'- -GCAGGUCACG--CACUa------GG-CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 207600 0.72 0.608622
Target:  5'- aCG-CCGGcUGCaaGAUCCGUCugGGCGg -3'
miRNA:   3'- -GCaGGUC-ACGcaCUAGGCGGugCCGC- -5'
14252 5' -58.8 NC_003521.1 + 223737 0.71 0.665562
Target:  5'- gGUCCGGUGgcgggaaCGUGGgucgCCGCCAgCGGUa -3'
miRNA:   3'- gCAGGUCAC-------GCACUa---GGCGGU-GCCGc -5'
14252 5' -58.8 NC_003521.1 + 43345 0.71 0.676129
Target:  5'- cCGUCCGGcccgccgcGCGUGAacaUCCGCCAgagcaugcgcUGGCGc -3'
miRNA:   3'- -GCAGGUCa-------CGCACU---AGGCGGU----------GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 23236 0.7 0.727248
Target:  5'- gGUCCGGgGCGgacccgggguccugaUGAucUCCGCCaugACGGCGa -3'
miRNA:   3'- gCAGGUCaCGC---------------ACU--AGGCGG---UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.