miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 112798 0.66 0.904826
Target:  5'- gCGUgCGGcGCGaGGUgCCGCgCACGGUGa -3'
miRNA:   3'- -GCAgGUCaCGCaCUA-GGCG-GUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 56778 0.66 0.892654
Target:  5'- cCGUCCAgcugcuGUGCGcGAgggCuCGCgACGGCa -3'
miRNA:   3'- -GCAGGU------CACGCaCUa--G-GCGgUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 207600 0.72 0.608622
Target:  5'- aCG-CCGGcUGCaaGAUCCGUCugGGCGg -3'
miRNA:   3'- -GCaGGUC-ACGcaCUAGGCGGugCCGC- -5'
14252 5' -58.8 NC_003521.1 + 172304 0.72 0.579793
Target:  5'- cCGUCCGGUGUcgGUGGcgccaggCCgGUCGCGGCGg -3'
miRNA:   3'- -GCAGGUCACG--CACUa------GG-CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 47625 0.73 0.56073
Target:  5'- uCGUCCAG-GCGg---CCGUgACGGCGg -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 142324 0.71 0.656896
Target:  5'- uCGUCgCaacugGGUGCGcGAggccgCCGCCACGGCc -3'
miRNA:   3'- -GCAG-G-----UCACGCaCUa----GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 102005 0.73 0.513933
Target:  5'- uGUCCAGgcacaggGCGUGGUugagcaCCuggGCCACGGCGc -3'
miRNA:   3'- gCAGGUCa------CGCACUA------GG---CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 149171 0.66 0.886261
Target:  5'- uCGUCCGucucgGCGcGcgUCGCCAcCGGCGg -3'
miRNA:   3'- -GCAGGUca---CGCaCuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 58384 0.66 0.886261
Target:  5'- --cCCcGUGCacaggggGAUCUGCCGCGGCc -3'
miRNA:   3'- gcaGGuCACGca-----CUAGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 122102 0.66 0.886261
Target:  5'- gGUCUcGUGCGgcugcagcgGcGUCuCGCCGCGGCu -3'
miRNA:   3'- gCAGGuCACGCa--------C-UAG-GCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 111712 0.68 0.836148
Target:  5'- aCGUCCAGUcCGUGcgCCGgCACGcCa -3'
miRNA:   3'- -GCAGGUCAcGCACuaGGCgGUGCcGc -5'
14252 5' -58.8 NC_003521.1 + 111589 0.68 0.820258
Target:  5'- -uUCCGGacUGCGUGGUagucuuccucUCGCCccGCGGCGa -3'
miRNA:   3'- gcAGGUC--ACGCACUA----------GGCGG--UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 228732 0.68 0.812082
Target:  5'- uGUCgGGcUGCGUGGUgaGCaGCGGCGu -3'
miRNA:   3'- gCAGgUC-ACGCACUAggCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 119308 0.68 0.803759
Target:  5'- cCGUCCAGgugagGCGgauggUGAUgCGCaCGCGGuCGg -3'
miRNA:   3'- -GCAGGUCa----CGC-----ACUAgGCG-GUGCC-GC- -5'
14252 5' -58.8 NC_003521.1 + 116767 0.71 0.656896
Target:  5'- uGUgCA--GCGUGGgccgCCGCCGCGGCa -3'
miRNA:   3'- gCAgGUcaCGCACUa---GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 148402 0.67 0.879668
Target:  5'- gGUCCAcGUGCGaGGga-GCCAUGGUGc -3'
miRNA:   3'- gCAGGU-CACGCaCUaggCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 177705 0.67 0.879668
Target:  5'- uGUUCAG-GUcgGUGAUCCGCC-CGGg- -3'
miRNA:   3'- gCAGGUCaCG--CACUAGGCGGuGCCgc -5'
14252 5' -58.8 NC_003521.1 + 131765 0.67 0.879668
Target:  5'- --aCCAG-GCgGUGAUCCGCaGCGaGCGc -3'
miRNA:   3'- gcaGGUCaCG-CACUAGGCGgUGC-CGC- -5'
14252 5' -58.8 NC_003521.1 + 125999 0.66 0.886261
Target:  5'- uGUCC-GUGCaccGUGG-CCGCCGCGuuGCGc -3'
miRNA:   3'- gCAGGuCACG---CACUaGGCGGUGC--CGC- -5'
14252 5' -58.8 NC_003521.1 + 105574 0.66 0.886261
Target:  5'- gCGUCCGccGcCGUGucgucgCCGCCGcCGGCGc -3'
miRNA:   3'- -GCAGGUcaC-GCACua----GGCGGU-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.