miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 116767 0.71 0.656896
Target:  5'- uGUgCA--GCGUGGgccgCCGCCGCGGCa -3'
miRNA:   3'- gCAgGUcaCGCACUa---GGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 92496 0.72 0.608622
Target:  5'- -cUCCGG-GCGUGGUCCGCCACc--- -3'
miRNA:   3'- gcAGGUCaCGCACUAGGCGGUGccgc -5'
14252 5' -58.8 NC_003521.1 + 124434 0.72 0.589377
Target:  5'- uCGUCCGGcgaGaCGUGGUUgGgCCGCGGCGg -3'
miRNA:   3'- -GCAGGUCa--C-GCACUAGgC-GGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 102005 0.73 0.513933
Target:  5'- uGUCCAGgcacaggGCGUGGUugagcaCCuggGCCACGGCGc -3'
miRNA:   3'- gCAGGUCa------CGCACUA------GG---CGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 103425 0.79 0.273556
Target:  5'- gCGUCgAcGUGCGUGAgcUCCGCCaggucGCGGCGg -3'
miRNA:   3'- -GCAGgU-CACGCACU--AGGCGG-----UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 111712 0.68 0.836148
Target:  5'- aCGUCCAGUcCGUGcgCCGgCACGcCa -3'
miRNA:   3'- -GCAGGUCAcGCACuaGGCgGUGCcGc -5'
14252 5' -58.8 NC_003521.1 + 121339 0.68 0.836148
Target:  5'- aCGUCCAGcaUGaCGUGcgCCGUCuugccCGGCu -3'
miRNA:   3'- -GCAGGUC--AC-GCACuaGGCGGu----GCCGc -5'
14252 5' -58.8 NC_003521.1 + 88441 0.67 0.858728
Target:  5'- -cUCCAGggaGaCGUcGUCCGCCuCGGCGu -3'
miRNA:   3'- gcAGGUCa--C-GCAcUAGGCGGuGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 149171 0.66 0.886261
Target:  5'- uCGUCCGucucgGCGcGcgUCGCCAcCGGCGg -3'
miRNA:   3'- -GCAGGUca---CGCaCuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 58384 0.66 0.886261
Target:  5'- --cCCcGUGCacaggggGAUCUGCCGCGGCc -3'
miRNA:   3'- gcaGGuCACGca-----CUAGGCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 122102 0.66 0.886261
Target:  5'- gGUCUcGUGCGgcugcagcgGcGUCuCGCCGCGGCu -3'
miRNA:   3'- gCAGGuCACGCa--------C-UAG-GCGGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 105574 0.66 0.886261
Target:  5'- gCGUCCGccGcCGUGucgucgCCGCCGcCGGCGc -3'
miRNA:   3'- -GCAGGUcaC-GCACua----GGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 125999 0.66 0.886261
Target:  5'- uGUCC-GUGCaccGUGG-CCGCCGCGuuGCGc -3'
miRNA:   3'- gCAGGuCACG---CACUaGGCGGUGC--CGC- -5'
14252 5' -58.8 NC_003521.1 + 131765 0.67 0.879668
Target:  5'- --aCCAG-GCgGUGAUCCGCaGCGaGCGc -3'
miRNA:   3'- gcaGGUCaCG-CACUAGGCGgUGC-CGC- -5'
14252 5' -58.8 NC_003521.1 + 148402 0.67 0.879668
Target:  5'- gGUCCAcGUGCGaGGga-GCCAUGGUGc -3'
miRNA:   3'- gCAGGU-CACGCaCUaggCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 145384 0.67 0.879668
Target:  5'- aG-CCGGUGCGcGA-CgGCCugGGCc -3'
miRNA:   3'- gCaGGUCACGCaCUaGgCGGugCCGc -5'
14252 5' -58.8 NC_003521.1 + 138014 0.67 0.879668
Target:  5'- gCGUCgAGgugcGCGUGcgUCGCUGcCGGCGc -3'
miRNA:   3'- -GCAGgUCa---CGCACuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 127376 0.67 0.879668
Target:  5'- gCGgcaGGUGCGUGAUgaagggCgGCCACaGGCGg -3'
miRNA:   3'- -GCaggUCACGCACUA------GgCGGUG-CCGC- -5'
14252 5' -58.8 NC_003521.1 + 4332 0.67 0.879668
Target:  5'- cCGUCCA-UGCcUGGcgccaCCGCCGcCGGCGg -3'
miRNA:   3'- -GCAGGUcACGcACUa----GGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 17483 0.67 0.858728
Target:  5'- aCGgcaCCGGUaGCG-GcgCCGCCggucACGGCGg -3'
miRNA:   3'- -GCa--GGUCA-CGCaCuaGGCGG----UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.