miRNA display CGI


Results 21 - 40 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 5' -58.8 NC_003521.1 + 177705 0.67 0.879668
Target:  5'- uGUUCAG-GUcgGUGAUCCGCC-CGGg- -3'
miRNA:   3'- gCAGGUCaCG--CACUAGGCGGuGCCgc -5'
14252 5' -58.8 NC_003521.1 + 148402 0.67 0.879668
Target:  5'- gGUCCAcGUGCGaGGga-GCCAUGGUGc -3'
miRNA:   3'- gCAGGU-CACGCaCUaggCGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 145384 0.67 0.879668
Target:  5'- aG-CCGGUGCGcGA-CgGCCugGGCc -3'
miRNA:   3'- gCaGGUCACGCaCUaGgCGGugCCGc -5'
14252 5' -58.8 NC_003521.1 + 138014 0.67 0.879668
Target:  5'- gCGUCgAGgugcGCGUGcgUCGCUGcCGGCGc -3'
miRNA:   3'- -GCAGgUCa---CGCACuaGGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 127376 0.67 0.879668
Target:  5'- gCGgcaGGUGCGUGAUgaagggCgGCCACaGGCGg -3'
miRNA:   3'- -GCaggUCACGCACUA------GgCGGUG-CCGC- -5'
14252 5' -58.8 NC_003521.1 + 4332 0.67 0.879668
Target:  5'- cCGUCCA-UGCcUGGcgccaCCGCCGcCGGCGg -3'
miRNA:   3'- -GCAGGUcACGcACUa----GGCGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 169158 0.67 0.858728
Target:  5'- --aCCaAGUGCGUGGUgCGCCGCuccaacucGGCc -3'
miRNA:   3'- gcaGG-UCACGCACUAgGCGGUG--------CCGc -5'
14252 5' -58.8 NC_003521.1 + 88441 0.67 0.858728
Target:  5'- -cUCCAGggaGaCGUcGUCCGCCuCGGCGu -3'
miRNA:   3'- gcAGGUCa--C-GCAcUAGGCGGuGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 17483 0.67 0.858728
Target:  5'- aCGgcaCCGGUaGCG-GcgCCGCCggucACGGCGg -3'
miRNA:   3'- -GCa--GGUCA-CGCaCuaGGCGG----UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 7969 0.67 0.858728
Target:  5'- uGUCgCGGc-CGggagGGUCCGCgGCGGCGg -3'
miRNA:   3'- gCAG-GUCacGCa---CUAGGCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 64829 0.67 0.851376
Target:  5'- cCGUCCGGgGCuaacagggGAUCU-CCACGGCGa -3'
miRNA:   3'- -GCAGGUCaCGca------CUAGGcGGUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 53505 0.67 0.851376
Target:  5'- aG-CCGGUGCGcUGuuGUCCGaCGCGGCc -3'
miRNA:   3'- gCaGGUCACGC-AC--UAGGCgGUGCCGc -5'
14252 5' -58.8 NC_003521.1 + 111712 0.68 0.836148
Target:  5'- aCGUCCAGUcCGUGcgCCGgCACGcCa -3'
miRNA:   3'- -GCAGGUCAcGCACuaGGCgGUGCcGc -5'
14252 5' -58.8 NC_003521.1 + 121339 0.68 0.836148
Target:  5'- aCGUCCAGcaUGaCGUGcgCCGUCuugccCGGCu -3'
miRNA:   3'- -GCAGGUC--AC-GCACuaGGCGGu----GCCGc -5'
14252 5' -58.8 NC_003521.1 + 163295 0.68 0.835368
Target:  5'- aCGUCCAGUugcgacgGCGUG-UCCacgGUCAgCGGCGc -3'
miRNA:   3'- -GCAGGUCA-------CGCACuAGG---CGGU-GCCGC- -5'
14252 5' -58.8 NC_003521.1 + 221951 0.68 0.820258
Target:  5'- aCGUCCAG-GCGg---UCGCCguACGGCa -3'
miRNA:   3'- -GCAGGUCaCGCacuaGGCGG--UGCCGc -5'
14252 5' -58.8 NC_003521.1 + 111589 0.68 0.820258
Target:  5'- -uUCCGGacUGCGUGGUagucuuccucUCGCCccGCGGCGa -3'
miRNA:   3'- gcAGGUC--ACGCACUA----------GGCGG--UGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 228732 0.68 0.812082
Target:  5'- uGUCgGGcUGCGUGGUgaGCaGCGGCGu -3'
miRNA:   3'- gCAGgUC-ACGCACUAggCGgUGCCGC- -5'
14252 5' -58.8 NC_003521.1 + 119308 0.68 0.803759
Target:  5'- cCGUCCAGgugagGCGgauggUGAUgCGCaCGCGGuCGg -3'
miRNA:   3'- -GCAGGUCa----CGC-----ACUAgGCG-GUGCC-GC- -5'
14252 5' -58.8 NC_003521.1 + 166231 0.69 0.786707
Target:  5'- gGUagaAGaGCGUGAUgCCGCC-CGGCGa -3'
miRNA:   3'- gCAgg-UCaCGCACUA-GGCGGuGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.